ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak17d19 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ890139.1| Triticum turgidum subsp. durum mRNA for dehydrin (dhn29b gene) Length = 785 Score = 712 bits (359), Expect = 0.0 Identities = 434/459 (94%) Strand = Plus / Plus Query: 86 catggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgca 145 |||||||||| | || |||||||||||||||||||||||||||| | ||||||||||||| Sbjct: 88 catggcgcagttaatggacaaggccaaggggttcgtggcggagaagatatcgggggtgca 147 Query: 146 gaagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccac 205 ||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| Sbjct: 148 gaaaccggaggcggacctgtcggacctgtcggtgcagcacgtcggccgcgacggcgccac 207 Query: 206 cctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagat 265 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 208 cctgtccggccgcctcgacgtgcgcaacccctactcgcacaccatccccatctgcgagat 267 Query: 266 cagctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccggg 325 |||||||||| |||| |||||||||||||| || ||||||||||| |||||||||||||| Sbjct: 268 cagctactccttcaaaagcgccggccgcgacgtggcctccgggaccatgccggacccggg 327 Query: 326 gtcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgactt 385 ||||||||||||||||||||||||| ||||| ||||||| ||||||||||| |||||||| Sbjct: 328 gtcgctggtggccagcgacaccaccggcctcgacataccggtgaaggtgccgtacgactt 387 Query: 386 ccttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgt 445 ||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 388 cctgatgagcctggtgaaggacgccggcaaggactgggacctcgactacgagatgcgcgt 447 Query: 446 aggcctcaccatcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccgg 505 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 448 cggcctcaccgtcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccgg 507 Query: 506 cgagctcaagctccccacgctctccgacctcttctaaac 544 ||||||||||||||||||||||||||||||||| ||||| Sbjct: 508 cgagctcaagctccccacgctctccgacctcttttaaac 546
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 327 bits (165), Expect = 2e-86 Identities = 384/457 (84%) Strand = Plus / Minus Query: 87 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 146 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 6921687 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 6921628 Query: 147 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 206 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 6921627 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 6921568 Query: 207 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 266 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 6921567 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 6921508 Query: 267 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 326 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 6921507 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 6921448 Query: 327 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 386 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 6921447 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 6921388 Query: 387 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 446 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 6921387 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 6921328 Query: 447 ggcctcaccatcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccggc 506 ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct: 6921327 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgccgctcaccaagtccggc 6921268 Query: 507 gagctcaagctccccacgctctccgacctcttctaaa 543 ||||||||||||||||| ||||||||| ||||||||| Sbjct: 6921267 gagctcaagctccccaccctctccgacgtcttctaaa 6921231 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 230 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 285 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 24929240 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 24929295 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 451 tcaccatcgacctccccatcgtcggcaacttcac 484 ||||||||||||||||| ||||||||| |||||| Sbjct: 24929585 tcaccatcgacctccccgtcgtcggcagcttcac 24929618 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 102 gacaaggccaaggggttcgtggcggaga 129 |||| ||||||||||||||||||||||| Sbjct: 24929112 gacagggccaaggggttcgtggcggaga 24929139
>dbj|AP002902.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0492F05 Length = 159242 Score = 327 bits (165), Expect = 2e-86 Identities = 384/457 (84%) Strand = Plus / Minus Query: 87 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 146 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 89411 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 89352 Query: 147 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 206 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 89351 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 89292 Query: 207 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 266 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 89291 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 89232 Query: 267 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 326 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 89231 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 89172 Query: 327 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 386 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 89171 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 89112 Query: 387 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 446 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 89111 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 89052 Query: 447 ggcctcaccatcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccggc 506 ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct: 89051 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgccgctcaccaagtccggc 88992 Query: 507 gagctcaagctccccacgctctccgacctcttctaaa 543 ||||||||||||||||| ||||||||| ||||||||| Sbjct: 88991 gagctcaagctccccaccctctccgacgtcttctaaa 88955
>dbj|AP002900.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0443E07 Length = 159440 Score = 327 bits (165), Expect = 2e-86 Identities = 384/457 (84%) Strand = Plus / Minus Query: 87 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 146 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 43505 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 43446 Query: 147 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 206 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 43445 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 43386 Query: 207 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 266 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 43385 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 43326 Query: 267 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 326 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 43325 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 43266 Query: 327 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 386 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 43265 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 43206 Query: 387 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 446 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 43205 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 43146 Query: 447 ggcctcaccatcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccggc 506 ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct: 43145 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgccgctcaccaagtccggc 43086 Query: 507 gagctcaagctccccacgctctccgacctcttctaaa 543 ||||||||||||||||| ||||||||| ||||||||| Sbjct: 43085 gagctcaagctccccaccctctccgacgtcttctaaa 43049
>ref|NM_188551.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 456 Score = 325 bits (164), Expect = 9e-86 Identities = 383/456 (83%) Strand = Plus / Plus Query: 87 atggcgcagctgatcgacaaggccaaggggttcgtggcggagacggtatcgggggtgcag 146 |||||||||||| | |||||||| ||||||||||||||||| | ||| || ||||| || Sbjct: 1 atggcgcagctggtggacaaggcgaaggggttcgtggcggacaaggtggcgcgggtggag 60 Query: 147 aagccggaggcggacctgtcggacatgtcggtgcagcacgtcgggcgcgacggcgccacc 206 |||||||||||||| ||| | || ||||| | ||| ||| || |||| |||||||||| Sbjct: 61 aagccggaggcggagctggccgagctgtcgttccagagcgtgggccgcggcggcgccacc 120 Query: 207 ctgtccggccgcctcgacgtgcgcaacccctactcacacaccatccccatctgcgagatc 266 || | || ||| | |||||||||||||||||||| ||| ||||||| ||||||||| | Sbjct: 121 ctcgcggggcgcgtggacgtgcgcaacccctactcccactccatcccgatctgcgaggtg 180 Query: 267 agctactccctcaagagcgccggccgcgaagtcgcctccgggacgatgccggacccgggg 326 |||||||| || ||||||||||| | || || || || ||||||||||| ||||||||| Sbjct: 181 agctactcgctgaagagcgccgggagggaggtggcgtcggggacgatgcccgacccgggg 240 Query: 327 tcgctggtggccagcgacaccaccagcctccacatacccgtgaaggtgccctacgacttc 386 ||||| ||| |||||||||| | || |||| || ||||||||||| ||||||||| Sbjct: 241 tcgctcaccgccggcgacaccacgcggctggacatcccggtgaaggtgccgtacgacttc 300 Query: 387 cttgtgagcctgatgaaggacgccgggaaggactgggacctcgactacgagatgcgcgta 446 || |||||||| | ||||||||| | |||||||||| |||||||||||||| | || Sbjct: 301 ctggtgagcctcgccagggacgccggcagggactgggacatcgactacgagatgagggtc 360 Query: 447 ggcctcaccatcgacctccccatcgtcggcaacttcacgctgccgctcaccaaggccggc 506 ||||||||| |||||||||||||| ||||||||||||| ||||||||||||||| ||||| Sbjct: 361 ggcctcaccgtcgacctccccatcctcggcaacttcaccctgccgctcaccaagtccggc 420 Query: 507 gagctcaagctccccacgctctccgacctcttctaa 542 ||||||||||||||||| ||||||||| |||||||| Sbjct: 421 gagctcaagctccccaccctctccgacgtcttctaa 456
>dbj|AK063645.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H06, full insert sequence Length = 745 Score = 278 bits (140), Expect = 2e-71 Identities = 299/352 (84%) Strand = Plus / Plus Query: 192 cgcgacggcgccaccctgtccggccgcctcgacgtgcgcaacccctactcacacaccatc 251 |||| |||||||||||| | || ||| | |||||||||||||||||||| ||| ||||| Sbjct: 303 cgcggcggcgccaccctcgcggggcgcgtggacgtgcgcaacccctactcccactccatc 362 Query: 252 cccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccgggacg 311 || ||||||||| | |||||||| || ||||||||||| | || || || || |||||| Sbjct: 363 ccgatctgcgaggtgagctactcgctgaagagcgccgggagggaggtggcgtcggggacg 422 Query: 312 atgccggacccggggtcgctggtggccagcgacaccaccagcctccacatacccgtgaag 371 ||||| |||||||||||||| ||| |||||||||| | || |||| || |||||| Sbjct: 423 atgcccgacccggggtcgctcaccgccggcgacaccacgcggctggacatcccggtgaag 482 Query: 372 gtgccctacgacttccttgtgagcctgatgaaggacgccgggaaggactgggacctcgac 431 ||||| ||||||||||| |||||||| | ||||||||| | |||||||||| ||||| Sbjct: 483 gtgccgtacgacttcctggtgagcctcgccagggacgccggcagggactgggacatcgac 542 Query: 432 tacgagatgcgcgtaggcctcaccatcgacctccccatcgtcggcaacttcacgctgccg 491 ||||||||| | || ||||||||| |||||||||||||| ||||||||||||| |||||| Sbjct: 543 tacgagatgagggtcggcctcaccgtcgacctccccatcctcggcaacttcaccctgccg 602 Query: 492 ctcaccaaggccggcgagctcaagctccccacgctctccgacctcttctaaa 543 ||||||||| |||||||||||||||||||||| ||||||||| ||||||||| Sbjct: 603 ctcaccaagtccggcgagctcaagctccccaccctctccgacgtcttctaaa 654
>ref|XM_475961.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 456 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 330 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 389 Query: 476 caacttcac 484 ||||||||| Sbjct: 390 caacttcac 398 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 309 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 164 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 223 Query: 310 cgatgccggacccggggt 327 ||||||| || ||||||| Sbjct: 224 cgatgcccgatccggggt 241 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 11 tgatggacaaggcgaaagggttcgtggcggaga 43
>gb|AC137608.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0009C07, complete sequence Length = 148731 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 3606 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 3547 Query: 476 caacttcac 484 ||||||||| Sbjct: 3546 caacttcac 3538 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggc 290 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 3884 tccccatctgcgagctcacctacaccctcaagtgcgccggc 3844 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 4037 tgatggacaaggcgaaagggttcgtggcggaga 4005
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Minus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 28849313 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 28849254 Query: 476 caacttcac 484 ||||||||| Sbjct: 28849253 caacttcac 28849245 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Minus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggc 290 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 28849591 tccccatctgcgagctcacctacaccctcaagtgcgccggc 28849551 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Minus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 28849744 tgatggacaaggcgaaagggttcgtggcggaga 28849712
>dbj|AK066062.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050C18, full insert sequence Length = 947 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 632 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 691 Query: 476 caacttcac 484 ||||||||| Sbjct: 692 caacttcac 700 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 309 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 466 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 525 Query: 310 cgatgccggacccggggt 327 ||||||| || ||||||| Sbjct: 526 cgatgcccgatccggggt 543 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 313 tgatggacaaggcgaaagggttcgtggcggaga 345
>dbj|AK061818.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-B08, full insert sequence Length = 1125 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 810 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 869 Query: 476 caacttcac 484 ||||||||| Sbjct: 870 caacttcac 878 Score = 52.0 bits (26), Expect = 0.002 Identities = 65/78 (83%) Strand = Plus / Plus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggccgcgaagtcgcctccggga 309 |||||||||||||| ||| |||| |||||||| |||||||| || || || ||||| | Sbjct: 644 tccccatctgcgagctcacctacaccctcaagtgcgccggcaacgttgtggcgtccggca 703 Query: 310 cgatgccggacccggggt 327 ||||||| || ||||||| Sbjct: 704 cgatgcccgatccggggt 721 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 491 tgatggacaaggcgaaagggttcgtggcggaga 523
>gb|AC134929.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0035N21, complete sequence Length = 128331 Score = 81.8 bits (41), Expect = 2e-12 Identities = 62/69 (89%) Strand = Plus / Plus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| |||||||| || | ||| ||||||||||||||||||||||||||||| Sbjct: 24155 ggactgggacatcgactaccagctcgacgtcggcctcaccatcgacctccccatcgtcgg 24214 Query: 476 caacttcac 484 ||||||||| Sbjct: 24215 caacttcac 24223 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccggc 290 |||||||||||||| ||| |||| |||||||| |||||||| Sbjct: 23877 tccccatctgcgagctcacctacaccctcaagtgcgccggc 23917 Score = 42.1 bits (21), Expect = 1.9 Identities = 30/33 (90%) Strand = Plus / Plus Query: 97 tgatcgacaaggccaaggggttcgtggcggaga 129 |||| |||||||| || |||||||||||||||| Sbjct: 23724 tgatggacaaggcgaaagggttcgtggcggaga 23756
>gb|AY105938.1| Zea mays PCO134925 mRNA sequence Length = 913 Score = 79.8 bits (40), Expect = 9e-12 Identities = 91/108 (84%) Strand = Plus / Plus Query: 416 ggactgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcgg 475 |||||||||| ||||||||||| | | || || |||||| ||||||||||||||||||| Sbjct: 568 ggactgggacatcgactacgagctccaggtcgggctcaccgtcgacctccccatcgtcgg 627 Query: 476 caacttcacgctgccgctcaccaaggccggcgagctcaagctccccac 523 ||||||||| | |||||| ||| | |||||| ||||||||||||| Sbjct: 628 caacttcaccatcccgctctccacctctggcgagttcaagctccccac 675 Score = 44.1 bits (22), Expect = 0.47 Identities = 31/34 (91%) Strand = Plus / Plus Query: 96 ctgatcgacaaggccaaggggttcgtggcggaga 129 ||||| |||||||| ||||||||||| ||||||| Sbjct: 248 ctgatggacaaggcgaaggggttcgtcgcggaga 281
>gb|AY104771.1| Zea mays PCO087563 mRNA sequence Length = 629 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 229 gcaacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcgccg 288 ||||||||||||| ||| |||||||||||||||||||| |||| | |||||||||||| Sbjct: 422 gcaacccctactctcaccgcatccccatctgcgagatcacctacacgttcaagagcgccg 481 Query: 289 gc 290 || Sbjct: 482 gc 483 Score = 42.1 bits (21), Expect = 1.9 Identities = 57/69 (82%) Strand = Plus / Plus Query: 366 gtgaaggtgccctacgacttccttgtgagcctgatgaaggacgccgggaaggactgggac 425 ||||||||||| ||||||||| | ||| ||||||||||| ||| | |||||||||| Sbjct: 559 gtgaaggtgccgtacgacttcatcgtgtcgctgatgaaggatctcggaagggactgggac 618 Query: 426 ctcgactac 434 |||||||| Sbjct: 619 atcgactac 627 Score = 40.1 bits (20), Expect = 7.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 102 gacaaggccaaggggttcgtggcggaga 129 |||||||||||||| ||||||| ||||| Sbjct: 295 gacaaggccaagggcttcgtggtggaga 322
>gb|AY823547.1| Pennisetum glaucum late embryonic abundant-like protein mRNA, complete cds Length = 670 Score = 58.0 bits (29), Expect = 3e-05 Identities = 57/65 (87%), Gaps = 1/65 (1%) Strand = Plus / Plus Query: 420 tgggacctcgactacgagatgcgcgtaggcctcaccatcgacctccccatcgtcggcaac 479 |||||| ||||||||||| | | || || |||||||||||| ||||||||||||||||| Sbjct: 466 tgggacatcgactacgagctccaggtggggctcaccatcgac-tccccatcgtcggcaac 524 Query: 480 ttcac 484 ||||| Sbjct: 525 ttcac 529 Score = 48.1 bits (24), Expect = 0.030 Identities = 36/40 (90%) Strand = Plus / Plus Query: 250 tccccatctgcgagatcagctactccctcaagagcgccgg 289 |||||||||||||| ||| |||| |||||||| ||||||| Sbjct: 295 tccccatctgcgaggtcacctacaccctcaagtgcgccgg 334 Score = 48.1 bits (24), Expect = 0.030 Identities = 30/32 (93%) Strand = Plus / Plus Query: 96 ctgatcgacaaggccaaggggttcgtggcgga 127 ||||| ||||||||||||| |||||||||||| Sbjct: 141 ctgatggacaaggccaaggagttcgtggcgga 172 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 aaggtgccctacgacttcct 388 |||||||||||||||||||| Sbjct: 414 aaggtgccctacgacttcct 433
>ref|NM_192875.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 543 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 230 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 285 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 228 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 283 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 451 tcaccatcgacctccccatcgtcggcaacttcac 484 ||||||||||||||||| ||||||||| |||||| Sbjct: 449 tcaccatcgacctccccgtcgtcggcagcttcac 482 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 102 gacaaggccaaggggttcgtggcggaga 129 |||| ||||||||||||||||||||||| Sbjct: 100 gacagggccaaggggttcgtggcggaga 127
>dbj|AP002744.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0006C01 Length = 153865 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 230 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 285 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 1763 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 1818 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 451 tcaccatcgacctccccatcgtcggcaacttcac 484 ||||||||||||||||| ||||||||| |||||| Sbjct: 2108 tcaccatcgacctccccgtcgtcggcagcttcac 2141 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 102 gacaaggccaaggggttcgtggcggaga 129 |||| ||||||||||||||||||||||| Sbjct: 1635 gacagggccaaggggttcgtggcggaga 1662
>dbj|AP002819.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0501G01 Length = 154561 Score = 56.0 bits (28), Expect = 1e-04 Identities = 49/56 (87%) Strand = Plus / Plus Query: 230 caacccctactcacacaccatccccatctgcgagatcagctactccctcaagagcg 285 |||||||||||| ||| |||||||||||||||| ||| |||| || ||||||||| Sbjct: 152360 caacccctactcgcaccgcatccccatctgcgagctcacctacaccttcaagagcg 152415 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 451 tcaccatcgacctccccatcgtcggcaacttcac 484 ||||||||||||||||| ||||||||| |||||| Sbjct: 152705 tcaccatcgacctccccgtcgtcggcagcttcac 152738 Score = 48.1 bits (24), Expect = 0.030 Identities = 27/28 (96%) Strand = Plus / Plus Query: 102 gacaaggccaaggggttcgtggcggaga 129 |||| ||||||||||||||||||||||| Sbjct: 152232 gacagggccaaggggttcgtggcggaga 152259
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 472 tcggcaacttcacgctgccgctc 494 ||||||||||||||||||||||| Sbjct: 2161572 tcggcaacttcacgctgccgctc 2161550
>ref|XM_428380.1| PREDICTED: Gallus gallus similar to WD repeat membrane protein (LOC430829), partial mRNA Length = 4794 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 503 cggcgagctcaagctccccacgctctc 529 |||||||||| |||||||||||||||| Sbjct: 329 cggcgagctccagctccccacgctctc 303
>ref|XM_426791.1| PREDICTED: Gallus gallus similar to WD repeat membrane protein PWDMP (LOC429235), partial mRNA Length = 1068 Score = 46.1 bits (23), Expect = 0.12 Identities = 26/27 (96%) Strand = Plus / Minus Query: 503 cggcgagctcaagctccccacgctctc 529 |||||||||| |||||||||||||||| Sbjct: 320 cggcgagctccagctccccacgctctc 294
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 472 tcggcaacttcacgctgccgctc 494 ||||||||||||||||||||||| Sbjct: 2506656 tcggcaacttcacgctgccgctc 2506678
>gb|AY301064.1| Aeromonas salmonicida subsp. salmonicida strain A449 plasmid pAsa2, complete sequence Length = 5247 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 gctcaagctccccacgctctcc 530 |||||||||||||||||||||| Sbjct: 5104 gctcaagctccccacgctctcc 5083
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 cgccggccgcgaagtcgcctcc 305 |||||||||||||||||||||| Sbjct: 3114592 cgccggccgcgaagtcgcctcc 3114613
>emb|AJ508384.1|ASA508384 Aeromonas salmonicida subsp. salmonicida pAsal3 plasmid Length = 5249 Score = 44.1 bits (22), Expect = 0.47 Identities = 22/22 (100%) Strand = Plus / Minus Query: 509 gctcaagctccccacgctctcc 530 |||||||||||||||||||||| Sbjct: 4583 gctcaagctccccacgctctcc 4562
>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence Length = 3587082 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 90 gcgcagctgatcgacaaggcc 110 ||||||||||||||||||||| Sbjct: 3159747 gcgcagctgatcgacaaggcc 3159727 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cggacatgtcggtgcagcacgtcg 189 |||||||| ||||||||||||||| Sbjct: 1982132 cggacatggcggtgcagcacgtcg 1982109
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 cgacggcgccaccctgtccggccgc 218 |||||||||||||||| |||||||| Sbjct: 4431096 cgacggcgccaccctggccggccgc 4431072
>dbj|AP005913.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005A05 Length = 162520 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 cgacggcgccaccctgtccggccgc 218 |||||||||||||||| |||||||| Sbjct: 25826 cgacggcgccaccctggccggccgc 25802
>dbj|AP003508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0470C02 Length = 158849 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 194 cgacggcgccaccctgtccggccgc 218 |||||||||||||||| |||||||| Sbjct: 78777 cgacggcgccaccctggccggccgc 78753
>gb|CP000081.1| Leishmania major chromosome 35, complete sequence Length = 2090491 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ctccctcaagagcgccggcc 291 |||||||||||||||||||| Sbjct: 1798942 ctccctcaagagcgccggcc 1798961
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gctgatcgacaaggccaagg 114 |||||||||||||||||||| Sbjct: 1008063 gctgatcgacaaggccaagg 1008044
>gb|AY658486.1| Synthetic construct Peudomonas aeruginosa clone FLH052275.01F PA0028 gene, partial cds Length = 603 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cgccaccctgtccggccgcctcga 223 ||||||||||| |||||||||||| Sbjct: 469 cgccaccctgttcggccgcctcga 446
>gb|AE009031.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 57 of 256 of the complete sequence Length = 11123 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 agcctgatgaaggacgccgg 412 |||||||||||||||||||| Sbjct: 10062 agcctgatgaaggacgccgg 10081
>ref|XM_838462.1| Leishmania major strain Friedlin hypothetical protein (LMJ_1380) partial mRNA Length = 4464 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 ctccctcaagagcgccggcc 291 |||||||||||||||||||| Sbjct: 399 ctccctcaagagcgccggcc 418
>emb|AL591787.1|SME591787 Sinorhizobium meliloti 1021 complete chromosome; segment 6/12 Length = 329100 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 422 ggacctcgactacgagatgc 441 |||||||||||||||||||| Sbjct: 267257 ggacctcgactacgagatgc 267276
>emb|AL591785.1|SME591785 Sinorhizobium meliloti 1021 complete chromosome; segment 4/12 Length = 286550 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 agcctgatgaaggacgccgg 412 |||||||||||||||||||| Sbjct: 62130 agcctgatgaaggacgccgg 62149
>emb|X64730.1|HSGVPGENE Halobacterium salinarium gvp genes involved in gas vesicle synthesis Length = 8630 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggccgcctcgacgtgcgca 231 |||||||||||||||||||| Sbjct: 7865 cggccgcctcgacgtgcgca 7846
>gb|CP000320.1| Nitrobacter hamburgensis X14 plasmid 1, complete sequence Length = 294829 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggtgcagcacgtcgggcgcg 195 |||||||||||||||||||| Sbjct: 271051 ggtgcagcacgtcgggcgcg 271032 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 ggtgcagcacgtcgggcgcg 195 |||||||||||||||||||| Sbjct: 264132 ggtgcagcacgtcgggcgcg 264113
>emb|X94688.1|HSGVP H.salinarium gvp genes involved in gas vesicle synthesis Length = 8935 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggccgcctcgacgtgcgca 231 |||||||||||||||||||| Sbjct: 8171 cggccgcctcgacgtgcgca 8152
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome Length = 4296230 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 502 ccggcgagctcaagctcccc 521 |||||||||||||||||||| Sbjct: 1234478 ccggcgagctcaagctcccc 1234459
>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete sequence Length = 1632307 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 450 ctcaccatcgacctccccatcgtc 473 |||||||||| ||||||||||||| Sbjct: 726667 ctcaccatcgtcctccccatcgtc 726644
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 95 gctgatcgacaaggccaagg 114 |||||||||||||||||||| Sbjct: 1061463 gctgatcgacaaggccaagg 1061444
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 393 agcctgatgaaggacgccgg 412 |||||||||||||||||||| Sbjct: 623742 agcctgatgaaggacgccgg 623761
>gb|AF276230.1|AF276230 Pisum sativum cultivar Torsdag putative heme oxygenase 1 precursor (HO1) gene, complete cds; nuclear gene for chloroplast product Length = 2503 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aggccaaggggttcgtggcggaga 129 |||||||||||||||||| ||||| Sbjct: 226 aggccaaggggttcgtggaggaga 249
>gb|AF276229.1|AF276229 Pisum sativum cultivar Solara putative heme oxygenase 1 precursor (HO1) gene, complete cds; nuclear gene for chloroplast product Length = 2503 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aggccaaggggttcgtggcggaga 129 |||||||||||||||||| ||||| Sbjct: 226 aggccaaggggttcgtggaggaga 249
>gb|AF276228.1|AF276228 Pisum sativum cultivar Solara putative heme oxygenase 1 precursor (HO1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1469 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 106 aggccaaggggttcgtggcggaga 129 |||||||||||||||||| ||||| Sbjct: 526 aggccaaggggttcgtggaggaga 549
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 gcacgtcgggcgcgacggcg 201 |||||||||||||||||||| Sbjct: 1886780 gcacgtcgggcgcgacggcg 1886761
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 472 tcggcaacttcacgctgccg 491 |||||||||||||||||||| Sbjct: 1033993 tcggcaacttcacgctgccg 1033974
>gb|AE004861.1| Pseudomonas aeruginosa PAO1, section 422 of 529 of the complete genome Length = 10466 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 cgccaccctgtccggccgcc 219 |||||||||||||||||||| Sbjct: 3759 cgccaccctgtccggccgcc 3778
>gb|AE004442.1| Pseudomonas aeruginosa PAO1, section 3 of 529 of the complete genome Length = 10141 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 200 cgccaccctgtccggccgcctcga 223 ||||||||||| |||||||||||| Sbjct: 4754 cgccaccctgttcggccgcctcga 4731
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 389 tgtgagcctgatgaaggacgccgg 412 ||||| |||||||||||||||||| Sbjct: 3559107 tgtgaacctgatgaaggacgccgg 3559130
>gb|AE005157.1| Halobacterium sp. NRC-1 plasmid pNRC200 section 18 of 32 of the complete genome Length = 13510 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 212 cggccgcctcgacgtgcgca 231 |||||||||||||||||||| Sbjct: 2129 cggccgcctcgacgtgcgca 2110
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 89 ggcgcagctgatcgacaagg 108 |||||||||||||||||||| Sbjct: 1063708 ggcgcagctgatcgacaagg 1063689
>gb|AC005152.1|AC005152 Homo sapiens chromosome 17, clone hRPC.1037_O_7, complete sequence Length = 126150 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 381 gacttccttgtgagcctgatgaag 404 |||||||||||||| ||||||||| Sbjct: 20072 gacttccttgtgagactgatgaag 20095
>dbj|AB034704.1| Rubrivivax gelatinosus photosynthetic gene cluster, complete cds, stain:IL144 Length = 58996 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 474 ggcaacttcacgctgccgct 493 |||||||||||||||||||| Sbjct: 56230 ggcaacttcacgctgccgct 56249 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,925,548 Number of Sequences: 3902068 Number of extensions: 2925548 Number of successful extensions: 57257 Number of sequences better than 10.0: 55 Number of HSP's better than 10.0 without gapping: 56 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55583 Number of HSP's gapped (non-prelim): 1652 length of query: 544 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 521 effective length of database: 17,143,297,704 effective search space: 8931658103784 effective search space used: 8931658103784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
