ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | baak41g14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_474099.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 5163 Score = 184 bits (93), Expect = 3e-43 Identities = 287/351 (81%), Gaps = 3/351 (0%) Strand = Plus / Plus Query: 43 gagcgaaagacgcgatgagagattcatacaaagcagaactcgcaaggcagattctgctca 102 |||||||||| || ||||| | |||| |||| |||| || |||||||||||| || ||| Sbjct: 4811 gagcgaaagatgccttgagaaactcatgcaaaacagagctggcaaggcagattttgttca 4870 Query: 103 gcttcattgtcaagtcggtccatgacagcttaggttcgactcgacctcaaccggacagaa 162 | ||||| |||||||| || ||||| ||||||||||| ||| || || || ||||||||| Sbjct: 4871 gtttcatcgtcaagtcagtacatgatagcttaggttccactggagctgaatcggacagaa 4930 Query: 163 aaccaagcgggtcagatgaagctagtaacgaacagagcagcaaca---taaccaagaccg 219 ||||||| || |||| ||| || |||| | |||||||||||||| ||| ||||| Sbjct: 4931 aaccaagtggaccagacgaatctggtaatgcacagagcagcaacaacataaacaagagtc 4990 Query: 220 ccttaagtccaaaagagttcgacaaacaaccgaaggccaccgaggcgcccaaaagcgaga 279 | | | ||| |||||| | |||||||| | ||||||||||| || || || || |||| Sbjct: 4991 cgtcaggtcgcaaagagcttgacaaacagcagaaggccaccgtggtacctaagagtgaga 5050 Query: 280 aggatacagagggatttacagtggtttcaaagcgcagaaaaagcaagcagcatttcgtga 339 |||||||||| ||||||||||| |||||||| || |||| |||||||||||| || ||| Sbjct: 5051 aggatacagaaggatttacagtagtttcaaaacgtagaagaagcaagcagcactttgtgc 5110 Query: 340 atcccataaacggtctctactcccagcagtcaatctgcacttcggtcagct 390 |||||||| | |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 5111 atcccatacatggtctctattcccagcagtcaatttgcacttctgtcagct 5161
>emb|AL606445.2|OSJN00018 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0070O11, complete sequence Length = 134231 Score = 184 bits (93), Expect = 3e-43 Identities = 287/351 (81%), Gaps = 3/351 (0%) Strand = Plus / Plus Query: 43 gagcgaaagacgcgatgagagattcatacaaagcagaactcgcaaggcagattctgctca 102 |||||||||| || ||||| | |||| |||| |||| || |||||||||||| || ||| Sbjct: 24489 gagcgaaagatgccttgagaaactcatgcaaaacagagctggcaaggcagattttgttca 24548 Query: 103 gcttcattgtcaagtcggtccatgacagcttaggttcgactcgacctcaaccggacagaa 162 | ||||| |||||||| || ||||| ||||||||||| ||| || || || ||||||||| Sbjct: 24549 gtttcatcgtcaagtcagtacatgatagcttaggttccactggagctgaatcggacagaa 24608 Query: 163 aaccaagcgggtcagatgaagctagtaacgaacagagcagcaaca---taaccaagaccg 219 ||||||| || |||| ||| || |||| | |||||||||||||| ||| ||||| Sbjct: 24609 aaccaagtggaccagacgaatctggtaatgcacagagcagcaacaacataaacaagagtc 24668 Query: 220 ccttaagtccaaaagagttcgacaaacaaccgaaggccaccgaggcgcccaaaagcgaga 279 | | | ||| |||||| | |||||||| | ||||||||||| || || || || |||| Sbjct: 24669 cgtcaggtcgcaaagagcttgacaaacagcagaaggccaccgtggtacctaagagtgaga 24728 Query: 280 aggatacagagggatttacagtggtttcaaagcgcagaaaaagcaagcagcatttcgtga 339 |||||||||| ||||||||||| |||||||| || |||| |||||||||||| || ||| Sbjct: 24729 aggatacagaaggatttacagtagtttcaaaacgtagaagaagcaagcagcactttgtgc 24788 Query: 340 atcccataaacggtctctactcccagcagtcaatctgcacttcggtcagct 390 |||||||| | |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 24789 atcccatacatggtctctattcccagcagtcaatttgcacttctgtcagct 24839 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 506 gagcatgttgtcaaactgtacaaagttttccgc 538 |||||||| || ||||||||||||| ||||||| Sbjct: 24954 gagcatgtagtgaaactgtacaaagctttccgc 24986
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 184 bits (93), Expect = 3e-43 Identities = 287/351 (81%), Gaps = 3/351 (0%) Strand = Plus / Plus Query: 43 gagcgaaagacgcgatgagagattcatacaaagcagaactcgcaaggcagattctgctca 102 |||||||||| || ||||| | |||| |||| |||| || |||||||||||| || ||| Sbjct: 32881640 gagcgaaagatgccttgagaaactcatgcaaaacagagctggcaaggcagattttgttca 32881699 Query: 103 gcttcattgtcaagtcggtccatgacagcttaggttcgactcgacctcaaccggacagaa 162 | ||||| |||||||| || ||||| ||||||||||| ||| || || || ||||||||| Sbjct: 32881700 gtttcatcgtcaagtcagtacatgatagcttaggttccactggagctgaatcggacagaa 32881759 Query: 163 aaccaagcgggtcagatgaagctagtaacgaacagagcagcaaca---taaccaagaccg 219 ||||||| || |||| ||| || |||| | |||||||||||||| ||| ||||| Sbjct: 32881760 aaccaagtggaccagacgaatctggtaatgcacagagcagcaacaacataaacaagagtc 32881819 Query: 220 ccttaagtccaaaagagttcgacaaacaaccgaaggccaccgaggcgcccaaaagcgaga 279 | | | ||| |||||| | |||||||| | ||||||||||| || || || || |||| Sbjct: 32881820 cgtcaggtcgcaaagagcttgacaaacagcagaaggccaccgtggtacctaagagtgaga 32881879 Query: 280 aggatacagagggatttacagtggtttcaaagcgcagaaaaagcaagcagcatttcgtga 339 |||||||||| ||||||||||| |||||||| || |||| |||||||||||| || ||| Sbjct: 32881880 aggatacagaaggatttacagtagtttcaaaacgtagaagaagcaagcagcactttgtgc 32881939 Query: 340 atcccataaacggtctctactcccagcagtcaatctgcacttcggtcagct 390 |||||||| | |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 32881940 atcccatacatggtctctattcccagcagtcaatttgcacttctgtcagct 32881990 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 506 gagcatgttgtcaaactgtacaaagttttccgc 538 |||||||| || ||||||||||||| ||||||| Sbjct: 32882105 gagcatgtagtgaaactgtacaaagctttccgc 32882137
>dbj|AK100454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023091D11, full insert sequence Length = 2669 Score = 184 bits (93), Expect = 3e-43 Identities = 287/351 (81%), Gaps = 3/351 (0%) Strand = Plus / Plus Query: 43 gagcgaaagacgcgatgagagattcatacaaagcagaactcgcaaggcagattctgctca 102 |||||||||| || ||||| | |||| |||| |||| || |||||||||||| || ||| Sbjct: 2116 gagcgaaagatgccttgagaaactcatgcaaaacagagctggcaaggcagattttgttca 2175 Query: 103 gcttcattgtcaagtcggtccatgacagcttaggttcgactcgacctcaaccggacagaa 162 | ||||| |||||||| || ||||| ||||||||||| ||| || || || ||||||||| Sbjct: 2176 gtttcatcgtcaagtcagtacatgatagcttaggttccactggagctgaatcggacagaa 2235 Query: 163 aaccaagcgggtcagatgaagctagtaacgaacagagcagcaaca---taaccaagaccg 219 ||||||| || |||| ||| || |||| | |||||||||||||| ||| ||||| Sbjct: 2236 aaccaagtggaccagacgaatctggtaatgcacagagcagcaacaacataaacaagagtc 2295 Query: 220 ccttaagtccaaaagagttcgacaaacaaccgaaggccaccgaggcgcccaaaagcgaga 279 | | | ||| |||||| | |||||||| | ||||||||||| || || || || |||| Sbjct: 2296 cgtcaggtcgcaaagagcttgacaaacagcagaaggccaccgtggtacctaagagtgaga 2355 Query: 280 aggatacagagggatttacagtggtttcaaagcgcagaaaaagcaagcagcatttcgtga 339 |||||||||| ||||||||||| |||||||| || |||| |||||||||||| || ||| Sbjct: 2356 aggatacagaaggatttacagtagtttcaaaacgtagaagaagcaagcagcactttgtgc 2415 Query: 340 atcccataaacggtctctactcccagcagtcaatctgcacttcggtcagct 390 |||||||| | |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 2416 atcccatacatggtctctattcccagcagtcaatttgcacttctgtcagct 2466 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 506 gagcatgttgtcaaactgtacaaagttttccgc 538 |||||||| || ||||||||||||| ||||||| Sbjct: 2581 gagcatgtagtgaaactgtacaaagctttccgc 2613
>emb|AL117265.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0811D08, complete sequence Length = 123337 Score = 184 bits (93), Expect = 3e-43 Identities = 287/351 (81%), Gaps = 3/351 (0%) Strand = Plus / Plus Query: 43 gagcgaaagacgcgatgagagattcatacaaagcagaactcgcaaggcagattctgctca 102 |||||||||| || ||||| | |||| |||| |||| || |||||||||||| || ||| Sbjct: 4731 gagcgaaagatgccttgagaaactcatgcaaaacagagctggcaaggcagattttgttca 4790 Query: 103 gcttcattgtcaagtcggtccatgacagcttaggttcgactcgacctcaaccggacagaa 162 | ||||| |||||||| || ||||| ||||||||||| ||| || || || ||||||||| Sbjct: 4791 gtttcatcgtcaagtcagtacatgatagcttaggttccactggagctgaatcggacagaa 4850 Query: 163 aaccaagcgggtcagatgaagctagtaacgaacagagcagcaaca---taaccaagaccg 219 ||||||| || |||| ||| || |||| | |||||||||||||| ||| ||||| Sbjct: 4851 aaccaagtggaccagacgaatctggtaatgcacagagcagcaacaacataaacaagagtc 4910 Query: 220 ccttaagtccaaaagagttcgacaaacaaccgaaggccaccgaggcgcccaaaagcgaga 279 | | | ||| |||||| | |||||||| | ||||||||||| || || || || |||| Sbjct: 4911 cgtcaggtcgcaaagagcttgacaaacagcagaaggccaccgtggtacctaagagtgaga 4970 Query: 280 aggatacagagggatttacagtggtttcaaagcgcagaaaaagcaagcagcatttcgtga 339 |||||||||| ||||||||||| |||||||| || |||| |||||||||||| || ||| Sbjct: 4971 aggatacagaaggatttacagtagtttcaaaacgtagaagaagcaagcagcactttgtgc 5030 Query: 340 atcccataaacggtctctactcccagcagtcaatctgcacttcggtcagct 390 |||||||| | |||||||| |||||||||||||| |||||||| ||||||| Sbjct: 5031 atcccatacatggtctctattcccagcagtcaatttgcacttctgtcagct 5081 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 506 gagcatgttgtcaaactgtacaaagttttccgc 538 |||||||| || ||||||||||||| ||||||| Sbjct: 5196 gagcatgtagtgaaactgtacaaagctttccgc 5228
>gb|BT018990.1| Zea mays clone Contig475.F mRNA sequence Length = 1162 Score = 97.6 bits (49), Expect = 5e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 66 tcatacaaagcagaactcgcaaggcagattctgctcagcttcattgtcaagtcggtccat 125 ||||||||| ||||||| |||||||| ||| ||||||| |||||||| ||||| || ||| Sbjct: 615 tcatacaaaacagaacttgcaaggcaaattttgctcagtttcattgtgaagtcagtgcat 674 Query: 126 gacagcttaggttcgactcgacctcaaccggacagaaaaccaagcgggtcagatgaagct 185 ||||| |||||||| | | | || |||| || || || ||||| || |||||||||||| Sbjct: 675 gacagtttaggttccgcccaagctgaaccagagaggaagccaagtggatcagatgaagct 734 Query: 186 agtaacgaacagagcagcaac 206 ||||| |||||||||||||| Sbjct: 735 agtaataaacagagcagcaac 755 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 278 gaaggatacagagggatttacagtggtttcaaa 310 |||||||||||||||||||||||| |||||||| Sbjct: 827 gaaggatacagagggatttacagtcgtttcaaa 859
>gb|BT024112.1| Zea mays clone EL01N0513F07 mRNA sequence Length = 1924 Score = 97.6 bits (49), Expect = 5e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 66 tcatacaaagcagaactcgcaaggcagattctgctcagcttcattgtcaagtcggtccat 125 ||||||||| ||||||| |||||||| ||| ||||||| |||||||| ||||| || ||| Sbjct: 1379 tcatacaaaacagaacttgcaaggcaaattttgctcagtttcattgtaaagtcagtgcat 1438 Query: 126 gacagcttaggttcgactcgacctcaaccggacagaaaaccaagcgggtcagatgaagct 185 ||||| |||||||| | | | || |||| || || || ||||| || |||||||||||| Sbjct: 1439 gacagtttaggttccgcccaagctgaaccagagaggaagccaagtggatcagatgaagct 1498 Query: 186 agtaacgaacagagcagcaac 206 ||||| |||||||||||||| Sbjct: 1499 agtaataaacagagcagcaac 1519 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 278 gaaggatacagagggatttacagtggtttcaaa 310 |||||||||||||||||||||||| |||||||| Sbjct: 1591 gaaggatacagagggatttacagtcgtttcaaa 1623 Score = 48.1 bits (24), Expect = 0.045 Identities = 30/32 (93%) Strand = Plus / Plus Query: 505 cgagcatgttgtcaaactgtacaaagttttcc 536 ||||||||| ||||||||||||||| |||||| Sbjct: 1806 cgagcatgtagtcaaactgtacaaaattttcc 1837
>gb|AY108125.1| Zea mays PCO127778 mRNA sequence Length = 666 Score = 97.6 bits (49), Expect = 5e-17 Identities = 118/141 (83%) Strand = Plus / Plus Query: 66 tcatacaaagcagaactcgcaaggcagattctgctcagcttcattgtcaagtcggtccat 125 ||||||||| ||||||| |||||||| ||| ||||||| |||||||| ||||| || ||| Sbjct: 141 tcatacaaaacagaacttgcaaggcaaattttgctcagtttcattgtgaagtcagtgcat 200 Query: 126 gacagcttaggttcgactcgacctcaaccggacagaaaaccaagcgggtcagatgaagct 185 ||||| |||||||| | | | || |||| || || || ||||| || |||||||||||| Sbjct: 201 gacagtttaggttccgcccaagctgaaccagagaggaagccaagtggatcagatgaagct 260 Query: 186 agtaacgaacagagcagcaac 206 ||||| |||||||||||||| Sbjct: 261 agtaataaacagagcagcaac 281 Score = 58.0 bits (29), Expect = 5e-05 Identities = 32/33 (96%) Strand = Plus / Plus Query: 278 gaaggatacagagggatttacagtggtttcaaa 310 |||||||||||||||||||||||| |||||||| Sbjct: 353 gaaggatacagagggatttacagtcgtttcaaa 385 Score = 48.1 bits (24), Expect = 0.045 Identities = 30/32 (93%) Strand = Plus / Plus Query: 505 cgagcatgttgtcaaactgtacaaagttttcc 536 ||||||||| ||||||||||||||| |||||| Sbjct: 568 cgagcatgtagtcaaactgtacaaaattttcc 599
>gb|BT017359.1| Zea mays clone EL01N0324C06.c mRNA sequence Length = 973 Score = 75.8 bits (38), Expect = 2e-10 Identities = 113/138 (81%) Strand = Plus / Plus Query: 66 tcatacaaagcagaactcgcaaggcagattctgctcagcttcattgtcaagtcggtccat 125 ||||||||| ||||||| |||||||| ||| | ||||| |||||||| |||||||| || Sbjct: 409 tcatacaaaacagaacttgcaaggcaaattttactcagtttcattgtgaagtcggtgcac 468 Query: 126 gacagcttaggttcgactcgacctcaaccggacagaaaaccaagcgggtcagatgaagct 185 ||||| |||||| | | || || |||| || || || ||||| || |||||||||||| Sbjct: 469 gacagtttaggtccctcccgggctgaaccagagaggaagccaagtggatcagatgaagct 528 Query: 186 agtaacgaacagagcagc 203 ||||| ||||||| |||| Sbjct: 529 agtaatgaacagaccagc 546 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 278 gaaggatacagagggatttacagtggtttcaaa 310 |||||||||||||||||| || || |||||||| Sbjct: 627 gaaggatacagagggattcactgtcgtttcaaa 659
>gb|AY107172.1| Zea mays PCO127780 mRNA sequence Length = 685 Score = 75.8 bits (38), Expect = 2e-10 Identities = 113/138 (81%) Strand = Plus / Plus Query: 66 tcatacaaagcagaactcgcaaggcagattctgctcagcttcattgtcaagtcggtccat 125 ||||||||| ||||||| |||||||| ||| | ||||| |||||||| |||||||| || Sbjct: 59 tcatacaaaacagaacttgcaaggcaaattttactcagtttcattgtgaagtcggtgcac 118 Query: 126 gacagcttaggttcgactcgacctcaaccggacagaaaaccaagcgggtcagatgaagct 185 ||||| |||||| | | || || |||| || || || ||||| || |||||||||||| Sbjct: 119 gacagtttaggtccctcccgggctgaaccagagaggaagccaagtggatcagatgaagct 178 Query: 186 agtaacgaacagagcagc 203 ||||| ||||||| |||| Sbjct: 179 agtaatgaacagaccagc 196 Score = 42.1 bits (21), Expect = 2.8 Identities = 30/33 (90%) Strand = Plus / Plus Query: 278 gaaggatacagagggatttacagtggtttcaaa 310 |||||||||||||||||| || || |||||||| Sbjct: 277 gaaggatacagagggattcactgtcgtttcaaa 309
>emb|AL121779.11|HS1094O14 Human DNA sequence from clone RP5-1094O14 on chromosome 20 Contains part of the PCSK2 gene for proprotein convertase subtilisin/kexin type 2, complete sequence Length = 60546 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 662 atttcctcccaacactccaatg 683 |||||||||||||||||||||| Sbjct: 48680 atttcctcccaacactccaatg 48701
>ref|XM_686796.1| PREDICTED: Danio rerio similar to CG2488-PB, isoform B (LOC563436), partial mRNA Length = 1945 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Plus Query: 372 atctgcacttcggtcagctgag 393 |||||||||||||||||||||| Sbjct: 1325 atctgcacttcggtcagctgag 1346
>gb|AC010083.5|AC010083 Homo sapiens BAC clone RP11-125L14 from 2, complete sequence Length = 200936 Score = 44.1 bits (22), Expect = 0.70 Identities = 22/22 (100%) Strand = Plus / Minus Query: 662 atttcctcccaacactccaatg 683 |||||||||||||||||||||| Sbjct: 159486 atttcctcccaacactccaatg 159465
>gb|AC000119.1| Homo sapiens BAC clone CTB-104I4 from 7, complete sequence Length = 191191 Score = 42.1 bits (21), Expect = 2.8 Identities = 24/25 (96%) Strand = Plus / Plus Query: 220 ccttaagtccaaaagagttcgacaa 244 |||||||||| |||||||||||||| Sbjct: 187466 ccttaagtcctaaagagttcgacaa 187490
>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome Length = 3544776 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 587 aatggtttcccccctccttcc 607 ||||||||||||||||||||| Sbjct: 1752882 aatggtttcccccctccttcc 1752862
>emb|AL161747.5|CNS01RHF Human chromosome 14 DNA sequence BAC R-689J19 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 170588 Score = 42.1 bits (21), Expect = 2.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 737 gtagttttgccctatccagat 757 ||||||||||||||||||||| Sbjct: 89690 gtagttttgccctatccagat 89670 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,169,793 Number of Sequences: 3902068 Number of extensions: 6169793 Number of successful extensions: 112671 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 112559 Number of HSP's gapped (non-prelim): 112 length of query: 792 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 769 effective length of database: 17,143,297,704 effective search space: 13183195934376 effective search space used: 13183195934376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
