>ICAL_MOUSE (P51125) Calpastatin (Calpain inhibitor)|
          Length = 788

 Score = 33.9 bits (76), Expect = 0.61
 Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
 Frame = +3

Query: 114 KSVHDSLGSTRPQPDR-KPSGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDTE 290
           K +  + G T+P PD  KP G+D+A +  SS+ T ++ + K+ +K+    E  K++  + 
Sbjct: 288 KLLEKNEGITQPLPDSPKPMGTDQAIDALSSDFTCSSPTGKQSEKEKSTGEIFKAQ--SA 345

Query: 291 GFTVVS-----KRRKSKQHFVN 341
           G T  S     K+RK ++  +N
Sbjct: 346 GVTRSSVPPKEKKRKVEEEVIN 367

>THO1_YEAST (P40040) Protein THO1|
          Length = 218

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
 Frame = +3

Query: 96  LLSFIVKSVHDSLGSTR--PQPDRKPSGSDEASNEQ--SSNITKTALSPKEFDKQPKATE 263
           L+  ++K   +S G +   PQ   +  GS+ A+ E+  S NIT+     KE   +PK T 
Sbjct: 30  LVQRLIKDDEESKGESEVSPQEQNQEQGSEPAAIEEPASQNITEK----KEVSSEPKETN 85

Query: 264 APKSE-KDTE 290
            PK E KD +
Sbjct: 86  EPKEENKDVQ 95

>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)|
          Length = 1362

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
 Frame = +3

Query: 9   SGEDNSGKGKERAKDAMRDSYKAELARQILLSFIVKSVHDSLGSTRPQPDRKPSGSDEAS 188
           S  D+S      +  +  DS +    R   L   +K+VH+ L +       KP   ++  
Sbjct: 484 SSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDK 543

Query: 189 NEQSSNITKTALSPKEFDKQPKATEAP--KSEKDTEGFTVVSKR 314
            E+     K     +E +K+ KA E P  K++K+    + VSK+
Sbjct: 544 KEKKKEKHKRKEEVEE-NKKSKAKEPPPKKTKKNNSSNSNVSKK 586

>KIF1A_MOUSE (P33173) Kinesin-like protein KIF1A (Axonal transporter of synaptic|
            vesicles)
          Length = 1695

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
 Frame = +3

Query: 6    VSGEDNSGKGKERAKDAMRDSYKAELARQILLSFIVKSVH-----DSLGST-RPQPDRKP 167
            V GE+N    + R+   + D ++ EL +  LL  + K+ H     + L +T RP P+   
Sbjct: 1360 VRGEENLAGWRPRSDSLILD-HQWELEKLSLLQEVEKTRHYLLLREKLETTQRPGPEVLS 1418

Query: 168  SGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEK 281
              S E S  +SS+    A SP   + QP   EAP   +
Sbjct: 1419 PASSEDSESRSSS---GASSPLSAEGQPSPLEAPNERQ 1453

>IBMP_CERV (P05401) Inclusion body matrix protein (Viroplasmin)|
          Length = 496

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 6/112 (5%)
 Frame = +3

Query: 39  ERAKDAMRDSYKAELARQIL---LSFIVKSVHDSLGSTRP-QPDRKPSGS--DEASNEQS 200
           ER +  +++    EL  Q L   L F+  S  +  G   P +P+ + S +    A  ++S
Sbjct: 2   ERHEQILKEIAFLELRLQSLKLELEFVRSSGSEQKGKIEPFRPNSECSATPMQTAIGKES 61

Query: 201 SNITKTALSPKEFDKQPKATEAPKSEKDTEGFTVVSKRRKSKQHFVNPINGL 356
           SN       PK   K  KA+E P   K  + F+ + K       F+ P  G+
Sbjct: 62  SNPLMAISLPKAEKKHSKASEVPSPHKTVKEFSEIPK------DFLRPNQGI 107

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
           chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 25/104 (24%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
 Frame = +3

Query: 9   SGEDNSGKGKERAKDAMRDSYKAELARQILLSFIVKSVHDSLGSTRPQPDRKPSGSDEAS 188
           S  D+S      +  +  DS +    R   L   +K+VH+ L +       KP   ++  
Sbjct: 485 SSSDSSSDSSSDSDSSTDDSEEERAQRLAELQEQLKAVHEQLAALSQPQQNKPKKKEKDK 544

Query: 189 NEQSSNITKTALSPKEFDKQPKATEAP--KSEKDTEGFTVVSKR 314
            E+     K     +E +K+ K  E P  K++K+    + VSK+
Sbjct: 545 KEKKKEKHKKKEEVEE-NKKSKTKELPPKKTKKNNSSNSNVSKK 587

>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1|
          Length = 888

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = +3

Query: 111 VKSVHDSLGSTRPQPDRKPSGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDTE 290
           V S   + GS  P P +K  G    +  +S +      SP +  K P  + +P    D E
Sbjct: 739 VSSSRSASGSPEPAP-KKHQGPPSPARSRSPSAN---WSPAKKAKSPTQSPSPARNSDQE 794

Query: 291 GFTVVSKRRKSKQH 332
           G     K++K K+H
Sbjct: 795 GGGKKKKKKKDKKH 808

>PRLR_RAT (P05710) Prolactin receptor precursor (PRL-R) (Lactogen receptor)|
          Length = 610

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +3

Query: 201 SNITKTALSPKEFDKQPKATEAPKSEKDTEGFTVVSKRRK 320
           S    TAL  +   K P + EA +SEKD   FT  S  R+
Sbjct: 552 SRAQNTALLEESAKKAPPSFEADQSEKDLASFTATSSNRR 591

>DON1_YEAST (Q05610) Donuts protein 1|
          Length = 365

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 10/104 (9%)
 Frame = +3

Query: 6   VSGEDNSGKGKERAKDAMRDSYKAELARQILLSFIVKSVHDSLGSTR---PQPDRKPSGS 176
           +S ED+  KGKE+ K+  ++  + E     L    VK V  SL + R        +PS +
Sbjct: 219 LSNEDSILKGKEKGKEEEKEKGE-EKGVNSLKGAAVKVVAKSLKNNRIPVTVKRNEPSNN 277

Query: 177 -------DEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDT 287
                  DE+  E+  ++ +T  S +E   Q   TE P++++D+
Sbjct: 278 LFDVLNCDESEEEEEQDV-ETNTSNQERKNQGGNTEVPEAQRDS 320

>TCOF_MOUSE (O08784) Treacle protein (Treacher Collins syndrome protein|
           homolog)
          Length = 1320

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = +3

Query: 144 RPQPDRKPSGSDEASNEQSSNITKTALSPKEFDKQPKA--TEAPKSEKDTEGFTVVS 308
           RP+ D + S  D++ +E    +T      +   K P+A  T AP  E   +G   V+
Sbjct: 339 RPEKDSETSSEDDSDSEDEMPVTVNTPQARTSGKSPRARGTSAPAKESSQKGAPAVT 395

>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1|
          Length = 917

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +3

Query: 111 VKSVHDSLGSTRPQPDRKPSGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDTE 290
           V S     GS  P   + P+ +    ++  S     A+  K+  K P  + +P    D E
Sbjct: 760 VSSSRSVSGSPEPAAKKPPAPTSPVQSQSPSTNWSPAVPVKKA-KSPTPSPSPPRNSDQE 818

Query: 291 GFTVVSKRRKSKQH 332
           G     K++K K+H
Sbjct: 819 GGGKKKKKKKDKKH 832

>SIA7E_MOUSE (Q9QYJ1) Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase|
           5 (EC 2.4.99.-) (GalNAc alpha-2,6-sialyltransferase V)
           (ST6GalNAc V) (GD1 alpha synthase) (Sialyltransferase
           7E)
          Length = 336

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
 Frame = +3

Query: 120 VHDSLGSTRPQPDRKPSGSDEASNEQSSNITKTALSPK-EFDKQPKATEAPKSEKDTEGF 296
           V+ SLGS   Q +R P    +   +Q    T T  +   E   QP+ T AP   +  EG+
Sbjct: 25  VYSSLGS---QKERPPQQQQQQQQQQQQAATATGSTQLVESSPQPRRT-APAGPRQLEGY 80

Query: 297 TVVSKRRKSKQH 332
             V+  +  K H
Sbjct: 81  LGVADHKPLKMH 92

>TATA_VIBPA (Q87TH1) Sec-independent protein translocase protein tatA/E homolog|
          Length = 81

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 111 VKSVHDSLGSTRPQPDRKPSGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDTE 290
           ++ +   LGS      +  S  D A NE+ ++       PK  +KQ +   AP+++KD E
Sbjct: 25  LRGIGGDLGSAVKGFKKAMSDEDSAKNEKDADF-----EPKSLEKQQQKEAAPETKKDKE 79

>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1|
           (Ser/Arg-related nuclear matrix protein) (SR-related
           nuclear matrix protein of 160 kDa) (SRm160)
          Length = 904

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 20/74 (27%), Positives = 29/74 (39%)
 Frame = +3

Query: 111 VKSVHDSLGSTRPQPDRKPSGSDEASNEQSSNITKTALSPKEFDKQPKATEAPKSEKDTE 290
           V S     GS  P   +KP         QS +   +   P +  K P  + +P    D E
Sbjct: 747 VSSSRSVSGSPEPAA-KKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQE 805

Query: 291 GFTVVSKRRKSKQH 332
           G     K++K K+H
Sbjct: 806 GGGKKKKKKKDKKH 819


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,521,863
Number of Sequences: 219361
Number of extensions: 2172944
Number of successful extensions: 6253
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5995
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6240
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 8635968108
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)