Clone Name | baak44b02 |
---|---|
Clone Library Name | barley_pub |
>gb|AY603381.1| Oryza sativa (japonica cultivar-group) LysM-domain GPI-anchored protein mRNA, complete cds Length = 1521 Score = 260 bits (131), Expect = 5e-66 Identities = 356/431 (82%) Strand = Plus / Plus Query: 6 gacatccttgcaattccattgtcagcatgtgcgtctacgtttcctaactttgcttcggac 65 |||||||||||||| ||| || | || ||||| || | |||||| |||| |||||||||| Sbjct: 675 gacatccttgcaatcccactgcctgcctgtgcatcaatgtttcccaactctgcttcggac 734 Query: 66 tatggattgctggtggcaaacggaacctatgcactaactgctggcaactgtgtggaatgc 125 ||||||||||| |||||||| || |||||||||||||||||||| ||||||||| | || Sbjct: 735 tatggattgcttgtggcaaatgggacctatgcactaactgctggaaactgtgtgcagagc 794 Query: 126 agttgtgggccaggggatctcaatctgtactgcactcccgcttcattaggaacatcatgt 185 || ||||| ||||| |||||||| |||| ||||| || ||||||||| | |||||||| Sbjct: 795 agctgtggaccaggagatctcaaattgtattgcacaccagcttcattaacagcatcatgt 854 Query: 186 tcaagtatgcagtgctccaatagcagtctaatgcttggtaatatgactagccagcccacc 245 ||||||||||||||| ||||||||| || |||||||| ||| ||||| ||| ||||| Sbjct: 855 tcaagtatgcagtgccccaatagcaacctcatgcttgggaatgtgactgcccaatccacc 914 Query: 246 agtggtggctgtggtgtctcgtcttgcagctatgctggcttcattaacggaagcattgcc 305 |||||||| || |||||| ||||||||||||||||| | |||| |||| ||||||| Sbjct: 915 agtggtggatgcaatgtctcatcttgcagctatgctggacttgttaatggaaccattgcc 974 Query: 306 acatcgctatcctcaggtcttcaacctacatgccctggaccgcatcaatttcctccactg 365 || ||||| ||||| ||||||||||| |||||||| ||||| ||||| || || ||||| Sbjct: 975 acgtcgctctcctctggtcttcaacccacatgcccaggaccacatcagttccccccactc 1034 Query: 366 atggagccgtccactgcagcaatccatggctcataccttgctccgtcgccttcgccagga 425 | || | | | | ||||| || ||| || |||||||||||||| || ||| | |||||| Sbjct: 1035 agggcgacaccaattgcagtaaaccaaggatcataccttgctccatcacctgcaccagga 1094 Query: 426 cctggggaggc 436 |||||||||| Sbjct: 1095 gctggggaggc 1105
>dbj|AK062542.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-104-G03, full insert sequence Length = 594 Score = 202 bits (102), Expect = 1e-48 Identities = 285/346 (82%) Strand = Plus / Plus Query: 91 cctatgcactaactgctggcaactgtgtggaatgcagttgtgggccaggggatctcaatc 150 ||||||||||||||||||| ||||||||| | ||||| ||||| ||||| |||||||| Sbjct: 1 cctatgcactaactgctggaaactgtgtgcagtgcagctgtggaccaggagatctcaaat 60 Query: 151 tgtactgcactcccgcttcattaggaacatcatgttcaagtatgcagtgctccaatagca 210 |||| ||||| || ||||||||| | ||||||||||||||||||||||| ||||||||| Sbjct: 61 tgtattgcacaccagcttcattaacagcatcatgttcaagtatgcagtgccccaatagca 120 Query: 211 gtctaatgcttggtaatatgactagccagcccaccagtggtggctgtggtgtctcgtctt 270 || |||||||| ||| ||||| ||| ||||||||||||| || |||||| |||| Sbjct: 121 acctcatgcttgggaatgtgactgcccaatccaccagtggtggatgcaatgtctcatctt 180 Query: 271 gcagctatgctggcttcattaacggaagcattgccacatcgctatcctcaggtcttcaac 330 ||||||||||||| | |||| |||| ||||||||| ||||| ||||| |||||||||| Sbjct: 181 gcagctatgctggacttgttaatggaaccattgccacgtcgctctcctctggtcttcaac 240 Query: 331 ctacatgccctggaccgcatcaatttcctccactgatggagccgtccactgcagcaatcc 390 | |||||||| ||||| ||||| || || ||||| | || | | | | ||||| || || Sbjct: 241 ccacatgcccaggaccacatcagttccccccactcagggcgacaccaattgcagtaaacc 300 Query: 391 atggctcataccttgctccgtcgccttcgccaggacctggggaggc 436 | || |||||||||||||| || ||| | |||||| |||||||||| Sbjct: 301 aaggatcataccttgctccatcacctgcaccaggagctggggaggc 346
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 44 gtttcctaactttgcttcggactatggattgctggtggcaaacggaacctatgcactaac 103 |||||| |||| ||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 5572218 gtttcccaactctgcttcggactatggattgcttgtggcaaatgggacctatgcactaac 5572277 Query: 104 tgctggcaactgtgtggaatgcagttgtgggccaggggatctcaa 148 |||||| ||||||||| | ||||| ||||| ||||| |||||||| Sbjct: 5572278 tgctggaaactgtgtgcagtgcagctgtggaccaggagatctcaa 5572322 Score = 97.6 bits (49), Expect = 4e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 151 tgtactgcactcccgcttcattaggaacatcatgttcaagtatgcagtgctccaatagca 210 |||| ||||| || ||||||||| | ||||||||||||||||||||||| ||||||||| Sbjct: 5572412 tgtattgcacaccagcttcattaacagcatcatgttcaagtatgcagtgccccaatagca 5572471 Query: 211 gtctaatgcttggtaatatgactagccagcccaccagtggtggctgtggtgtctcgtctt 270 || |||||||| ||| ||||| ||| ||||||||||||| || |||||| |||| Sbjct: 5572472 acctcatgcttgggaatgtgactgcccaatccaccagtggtggatgcaatgtctcatctt 5572531 Query: 271 gcagctatgctgg 283 ||||||||||||| Sbjct: 5572532 gcagctatgctgg 5572544 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 396 tcataccttgctccgtcgccttcgccaggacctggggaggc 436 |||||||||||||| || ||| | |||||| |||||||||| Sbjct: 5573459 tcataccttgctccatcacctgcaccaggagctggggaggc 5573499
>dbj|AP004758.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0664C05 Length = 165354 Score = 121 bits (61), Expect = 3e-24 Identities = 94/105 (89%) Strand = Plus / Plus Query: 44 gtttcctaactttgcttcggactatggattgctggtggcaaacggaacctatgcactaac 103 |||||| |||| ||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 119126 gtttcccaactctgcttcggactatggattgcttgtggcaaatgggacctatgcactaac 119185 Query: 104 tgctggcaactgtgtggaatgcagttgtgggccaggggatctcaa 148 |||||| ||||||||| | ||||| ||||| ||||| |||||||| Sbjct: 119186 tgctggaaactgtgtgcagtgcagctgtggaccaggagatctcaa 119230 Score = 97.6 bits (49), Expect = 4e-17 Identities = 112/133 (84%) Strand = Plus / Plus Query: 151 tgtactgcactcccgcttcattaggaacatcatgttcaagtatgcagtgctccaatagca 210 |||| ||||| || ||||||||| | ||||||||||||||||||||||| ||||||||| Sbjct: 119320 tgtattgcacaccagcttcattaacagcatcatgttcaagtatgcagtgccccaatagca 119379 Query: 211 gtctaatgcttggtaatatgactagccagcccaccagtggtggctgtggtgtctcgtctt 270 || |||||||| ||| ||||| ||| ||||||||||||| || |||||| |||| Sbjct: 119380 acctcatgcttgggaatgtgactgcccaatccaccagtggtggatgcaatgtctcatctt 119439 Query: 271 gcagctatgctgg 283 ||||||||||||| Sbjct: 119440 gcagctatgctgg 119452 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Plus Query: 396 tcataccttgctccgtcgccttcgccaggacctggggaggc 436 |||||||||||||| || ||| | |||||| |||||||||| Sbjct: 120367 tcataccttgctccatcacctgcaccaggagctggggaggc 120407
>ref|NM_106411.3| Arabidopsis thaliana unknown protein AT1G77630 mRNA, complete cds Length = 1684 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 tcttcaacctacatgccctggaccgcatcaatt 355 |||||||||| ||||||||||||||| ||||| Sbjct: 1220 tcttcaacctcgatgccctggaccgcaacaatt 1252
>gb|BT010885.1| Arabidopsis thaliana At1g77630 gene, complete cds Length = 1272 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 tcttcaacctacatgccctggaccgcatcaatt 355 |||||||||| ||||||||||||||| ||||| Sbjct: 951 tcttcaacctcgatgccctggaccgcaacaatt 983
>ref|XM_506077.1| Yarrowia lipolytica CLIB122, YALI0F31031g predicted mRNA Length = 1353 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 cgctgttcctggctcgtccga 463 ||||||||||||||||||||| Sbjct: 1185 cgctgttcctggctcgtccga 1205
>emb|BX817126.1|CNS0ABRH Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH87ZC01 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1690 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 tcttcaacctacatgccctggaccgcatcaatt 355 |||||||||| ||||||||||||||| ||||| Sbjct: 1226 tcttcaacctcgatgccctggaccgcaacaatt 1258
>dbj|AK176769.1| Arabidopsis thaliana mRNA for predicted GPI-anchored protein, complete cds, clone: RAFL25-31-O10 Length = 1628 Score = 42.1 bits (21), Expect = 2.1 Identities = 30/33 (90%) Strand = Plus / Plus Query: 323 tcttcaacctacatgccctggaccgcatcaatt 355 |||||||||| ||||||||||||||| ||||| Sbjct: 1198 tcttcaacctcgatgccctggaccgcaacaatt 1230
>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica Length = 4003362 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 443 cgctgttcctggctcgtccga 463 ||||||||||||||||||||| Sbjct: 3870300 cgctgttcctggctcgtccga 3870320
>gb|DQ196238.1| Puccinia graminis f. sp. tritici hypothetical class III chitin synthase (chsIIIa) gene, exons 1 through 16 and complete cds Length = 5252 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 347 gcatcaatttcctccactgat 367 ||||||||||||||||||||| Sbjct: 603 gcatcaatttcctccactgat 623
>gb|AC121309.10| Mus musculus chromosome 3, clone RP24-303N8, complete sequence Length = 179337 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tgttcaagtatgcagtgctc 202 |||||||||||||||||||| Sbjct: 164020 tgttcaagtatgcagtgctc 164001
>gb|AE017345.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 5, complete sequence Length = 1507550 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tacatgccctggaccgcatc 351 |||||||||||||||||||| Sbjct: 741526 tacatgccctggaccgcatc 741507
>ref|XM_363100.1| Magnaporthe grisea 70-15 predicted protein (MG08684.4) partial cds Length = 600 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 ggccggtggcgctgttcctg 453 |||||||||||||||||||| Sbjct: 475 ggccggtggcgctgttcctg 456
>ref|XM_570989.1| Cryptococcus neoformans var. neoformans JEC21 tRNA binding protein (CNE02810) partial mRNA Length = 3636 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 tacatgccctggaccgcatc 351 |||||||||||||||||||| Sbjct: 308 tacatgccctggaccgcatc 289
>gb|AC123026.4| Mus musculus BAC clone RP24-549O22 from chromosome 3, complete sequence Length = 175610 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 tgttcaagtatgcagtgctc 202 |||||||||||||||||||| Sbjct: 16700 tgttcaagtatgcagtgctc 16681
>gb|AC104920.10| Mus musculus chromosome 10, clone RP23-360H23, complete sequence Length = 212273 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 tcaatttcctccactgatgg 369 |||||||||||||||||||| Sbjct: 208610 tcaatttcctccactgatgg 208591
>gb|AC098887.4| Mus musculus BAC clone RP23-122N6 from 10, complete sequence Length = 211397 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 tcaatttcctccactgatgg 369 |||||||||||||||||||| Sbjct: 160215 tcaatttcctccactgatgg 160234
>gb|AC113497.6| Mus musculus chromosome 10, clone RP23-365G13, complete sequence Length = 218508 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 caccagtggtggctgtggtg 261 |||||||||||||||||||| Sbjct: 186261 caccagtggtggctgtggtg 186280
>emb|AL080248.7|HSBA19D2 Human DNA sequence from clone RP11-19D2 on chromosome 20 Contains the a novel gene and the 5' end of a novel gene, complete sequence Length = 166913 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 116 tgtggaatgcagttgtgggc 135 |||||||||||||||||||| Sbjct: 139889 tgtggaatgcagttgtgggc 139908
>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part of the TCBA1 gene for T-cell lymphoma breakpoint associated target 1, complete sequence Length = 169493 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 530 gatcctcattctttctttag 549 |||||||||||||||||||| Sbjct: 88542 gatcctcattctttctttag 88561
>ref|XM_778518.1| PREDICTED: Strongylocentrotus purpuratus similar to 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase-like 4 (Phosphoinositide phospholipase C-like 4) (Phospholipase C-like 4) (LOC578345), mRNA Length = 8178 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 527 aatgatcctcattctttctt 546 |||||||||||||||||||| Sbjct: 4549 aatgatcctcattctttctt 4530
>emb|AL591851.12| Mouse DNA sequence from clone RP23-43M4 on chromosome 13 Contains a novel gene, an X-linked lymphocyte-regulated 5 (Xlr5) pseudogene and the 5' end of the gene for novel protein similar to human C6orf32 (KIAA0386, DIFF48), complete sequence Length = 53867 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 agcattgccacatcgctatc 316 |||||||||||||||||||| Sbjct: 24859 agcattgccacatcgctatc 24840
>gb|AC021055.18| Homo sapiens 3 BAC RP11-139K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 156754 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 atgtgaattcttctgtagga 583 |||||||||||||||||||| Sbjct: 47672 atgtgaattcttctgtagga 47653
>emb|AL669896.7| Mouse DNA sequence from clone RP23-477F4 on chromosome 2, complete sequence Length = 163577 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 caggtcttcaacctacatgc 338 |||||||||||||||||||| Sbjct: 60919 caggtcttcaacctacatgc 60938
>gb|AC153553.4| Mus musculus 10 BAC RP23-329D17 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185583 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 242 caccagtggtggctgtggtg 261 |||||||||||||||||||| Sbjct: 151921 caccagtggtggctgtggtg 151902
>emb|BX323601.6| Zebrafish DNA sequence from clone RP71-14P11, complete sequence Length = 207067 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 tgctccgtcgccttcgccag 423 |||||||||||||||||||| Sbjct: 8473 tgctccgtcgccttcgccag 8454
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acgtttcctaactttgcttc 61 |||||||||||||||||||| Sbjct: 22897179 acgtttcctaactttgcttc 22897198
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 435 gccggtggcgctgttcctgg 454 |||||||||||||||||||| Sbjct: 517064 gccggtggcgctgttcctgg 517083
>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome Length = 3147090 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 ctggcaactgtgtggaatgc 125 |||||||||||||||||||| Sbjct: 901424 ctggcaactgtgtggaatgc 901443
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acgtttcctaactttgcttc 61 |||||||||||||||||||| Sbjct: 22825370 acgtttcctaactttgcttc 22825389
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 155568 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 acgtttcctaactttgcttc 61 |||||||||||||||||||| Sbjct: 6456 acgtttcctaactttgcttc 6475
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acgtttcctaactttgcttc 61 |||||||||||||||||||| Sbjct: 59665 acgtttcctaactttgcttc 59646
>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome Length = 3184243 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 233 tagccagcccaccagtggtg 252 |||||||||||||||||||| Sbjct: 2323886 tagccagcccaccagtggtg 2323905
>dbj|AB035665.1| Branchiostoma belcheri AmphiMRLC mRNA for myosin regulatory light chain, complete cds Length = 1136 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 540 ctttctttagtcttctacct 559 |||||||||||||||||||| Sbjct: 590 ctttctttagtcttctacct 571 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,711,039 Number of Sequences: 3902068 Number of extensions: 4711039 Number of successful extensions: 81500 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 35 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 81279 Number of HSP's gapped (non-prelim): 221 length of query: 614 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 591 effective length of database: 17,143,297,704 effective search space: 10131688943064 effective search space used: 10131688943064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)