Clone Information

BLAST Search Result

Clone Name	baal14d22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_197204.1\| Oryza sativa (japonica cultivar-group) putative...	476	e-131
2	dbj\|AK105626.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	476	e-131
3	dbj\|AK059628.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	476	e-131
4	dbj\|AK067982.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	468	e-128
5	gb\|AY105414.1\| Zea mays PCO079032 mRNA sequence	432	e-118
6	gb\|AC079888.10\| Oryza sativa chromosome 10 BAC OSJNBa0078O01 gen...	206	6e-50
7	dbj\|AP008216.1\| Oryza sativa (japonica cultivar-group) genomic D...	206	6e-50
8	gb\|AE016959.3\| Oryza sativa (japonica cultivar-group) chromosome...	206	6e-50
9	gb\|BT018250.1\| Zea mays clone EL01N0563G06.c mRNA sequence	50	0.008
10	gb\|AE016825.1\| Chromobacterium violaceum ATCC 12472, complete ge...	48	0.032
11	gb\|AC127689.4\| Mus musculus BAC clone RP24-206I5 from chromosome...	44	0.49
12	gb\|AC158945.6\| Mus musculus chromosome 5, clone RP23-286J20, com...	44	0.49
13	gb\|AC159012.2\| Gallus gallus BAC clone CH261-5N5 from chromosome...	44	0.49
14	emb\|CR383660.9\| Zebrafish DNA sequence from clone DKEY-1H22 in l...	42	1.9
15	gb\|AC109666.7\| Rattus norvegicus 4 BAC CH230-252C14 (Children's ...	42	1.9
16	emb\|Z99107.2\|BSUB0004 Bacillus subtilis complete genome (section...	42	1.9
17	gb\|AY278739.1\| Rattus norvegicus paraplegin (Spg7) mRNA, complet...	42	1.9
18	emb\|BX548054.19\| Zebrafish DNA sequence from clone CH211-237N4 i...	42	1.9
19	gb\|AC118347.2\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.9
20	gb\|AC011446.6\|AC011446 Homo sapiens chromosome 19 clone CTC-250I...	42	1.9
21	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.9
22	ref\|NM_181388.2\| Rattus norvegicus spastic paraplegia 7 homolog ...	42	1.9
23	dbj\|AP002379.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	42	1.9
24	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.9
25	dbj\|D88802.1\| Bacillus subtilis DNA for phoB-rrnE-groESL region,...	42	1.9
26	gb\|AC166710.7\| Mus musculus chromosome 1, clone RP24-252K15, com...	40	7.7
27	gb\|BT017401.1\| Zea mays clone EL01N0329A09.c mRNA sequence	40	7.7
28	gb\|CP000094.1\| Pseudomonas fluorescens PfO-1, complete genome	40	7.7
29	gb\|AC139562.8\| Mus musculus chromosome 5, clone RP24-180G11, com...	40	7.7
30	gb\|CP000233.1\| Lactobacillus salivarius subsp. salivarius UCC118...	40	7.7
31	ref\|XM_389623.1\| Gibberella zeae PH-1 chromosome 4 hypothetical ...	40	7.7
32	gb\|AC126439.3\| Mus musculus BAC clone RP24-290I17 from chromosom...	40	7.7
33	gb\|DQ096844.1\| Xenopus laevis lapl06 mRNA, complete sequence	40	7.7
34	gb\|AC103876.2\| Homo sapiens chromosome 15, clone CTD-2282O12, co...	40	7.7
35	gb\|AF312994.1\|AF312994 Mus musculus chromosome 1 clone MML, comp...	40	7.7
36	dbj\|AK048306.1\| Mus musculus 16 days embryo head cDNA, RIKEN ful...	40	7.7
37	emb\|BX935083.2\| Gallus gallus finished cDNA, clone ChEST74d16	40	7.7
38	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	40	7.7
39	gb\|CP000251.1\| Anaeromyxobacter dehalogenans 2CP-C, complete genome	40	7.7
40	gb\|AC120860.7\| Mus musculus chromosome 1, clone RP23-26I10, comp...	40	7.7
41	gb\|AY108979.1\| Zea mays PCO080401 mRNA sequence	40	7.7
42	gb\|AC162461.6\| Mus musculus chromosome 5, clone RP23-265I19, com...	40	7.7
43	emb\|AL928922.7\| Mouse DNA sequence from clone RP23-431J22 on chr...	40	7.7
44	dbj\|AB070951.1\| Streptomyces avermitilis peptide-2 biosynthetic ...	40	7.7

>ref|NM_197204.1| Oryza sativa (japonica cultivar-group) putative PKCq-interacting
           protein (OSJNBa0078O01.9), mRNA
          Length = 1840

 Score =  476 bits (240), Expect = e-131
 Identities = 336/368 (91%)
 Strand = Plus / Plus

                                                                       
Query: 6   gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 188 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 247

                                                                       
Query: 66  gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 125
           ||||||||||| |||||||||||||||||| |||||||  |||||||| |||||||||||
Sbjct: 248 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 307

                                                                       
Query: 126 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 185
           || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 308 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 367

                                                                       
Query: 186 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 245
           |  |||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||
Sbjct: 368 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 427

                                                                       
Query: 246 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 305
           ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||| ||
Sbjct: 428 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 487

                                                                       
Query: 306 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 365
           || |||||||| |||||||||||||| ||||| || ||||| ||||||| ||||||||||
Sbjct: 488 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 547

                   
Query: 366 tcttctgc 373
            |||||||
Sbjct: 548 gcttctgc 555



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                       
Query: 399 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
           |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 590 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 649

                                                                       
Query: 459 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
           ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 650 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 709

                                                    
Query: 519 gggagctttgacatcctttcagataatgaagtacgtgaagg 559
           |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 710 gggagctttgacatcctaacagataacgatgtacgtgaagg 750

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>dbj|AK105626.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-C12, full
           insert sequence
          Length = 1441

 Score =  476 bits (240), Expect = e-131
 Identities = 336/368 (91%)
 Strand = Plus / Plus

                                                                       
Query: 6   gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 154 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 213

                                                                       
Query: 66  gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 125
           ||||||||||| |||||||||||||||||| |||||||  |||||||| |||||||||||
Sbjct: 214 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 273

                                                                       
Query: 126 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 185
           || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 274 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 333

                                                                       
Query: 186 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 245
           |  |||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||
Sbjct: 334 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 393

                                                                       
Query: 246 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 305
           ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||| ||
Sbjct: 394 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 453

                                                                       
Query: 306 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 365
           || |||||||| |||||||||||||| ||||| || ||||| ||||||| ||||||||||
Sbjct: 454 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 513

                   
Query: 366 tcttctgc 373
            |||||||
Sbjct: 514 gcttctgc 521



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                       
Query: 399 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
           |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 556 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 615

                                                                       
Query: 459 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
           ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 616 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 675

                                                    
Query: 519 gggagctttgacatcctttcagataatgaagtacgtgaagg 559
           |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 676 gggagctttgacatcctaacagataacgatgtacgtgaagg 716

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>dbj|AK059628.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-030-H12, full
           insert sequence
          Length = 1815

 Score =  476 bits (240), Expect = e-131
 Identities = 336/368 (91%)
 Strand = Plus / Plus

                                                                       
Query: 6   gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 198 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 257

                                                                       
Query: 66  gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 125
           ||||||||||| |||||||||||||||||| |||||||  |||||||| |||||||||||
Sbjct: 258 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 317

                                                                       
Query: 126 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 185
           || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 377

                                                                       
Query: 186 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 245
           |  |||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||
Sbjct: 378 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 437

                                                                       
Query: 246 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 305
           ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||| ||
Sbjct: 438 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 497

                                                                       
Query: 306 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 365
           || |||||||| |||||||||||||| ||||| || ||||| ||||||| ||||||||||
Sbjct: 498 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 557

                   
Query: 366 tcttctgc 373
            |||||||
Sbjct: 558 gcttctgc 565



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                       
Query: 399 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
           |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 600 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 659

                                                                       
Query: 459 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
           ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 660 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 719

                                                    
Query: 519 gggagctttgacatcctttcagataatgaagtacgtgaagg 559
           |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 720 gggagctttgacatcctaacagataacgatgtacgtgaagg 760

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>dbj|AK067982.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121J12, full
           insert sequence
          Length = 1949

 Score =  468 bits (236), Expect = e-128
 Identities = 335/368 (91%)
 Strand = Plus / Plus

                                                                       
Query: 6   gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
           |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 198 gcgcgggctgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 257

                                                                       
Query: 66  gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggttgaagct 125
           ||||||||||| |||||||||||||||||| |||||||  |||||||| |||||||||||
Sbjct: 258 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggttgaagct 317

                                                                       
Query: 126 gaagaacaaccggaaatttcagaggcatatggagttacagcagtgccatactttgttttc 185
           || |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 gaggaacaacccgaaatttcagaggcatatggagttacagcagtgccatattttgttttc 377

                                                                       
Query: 186 tgcaaggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaat 245
           |  |||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||
Sbjct: 378 ttgaaggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaat 437

                                                                       
Query: 246 aaggttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttg 305
           ||||||||||||||||||||||||||||  |||||| |||||||||| ||||||||| ||
Sbjct: 438 aaggttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctg 497

                                                                       
Query: 306 ggggtggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatgga 365
           || |||||||| |||||||||||||| ||||| || ||||| ||||||| ||||||||||
Sbjct: 498 ggtgtggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatgga 557

                   
Query: 366 tcttctgc 373
            |||||||
Sbjct: 558 gcttctgc 565



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                       
Query: 399 ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
           |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 600 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 659

                                                                       
Query: 459 ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
           ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 660 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 719

                                                    
Query: 519 gggagctttgacatcctttcagataatgaagtacgtgaagg 559
           |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 720 gggagctttgacatcctaacagataacgatgtacgtgaagg 760

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>gb|AY105414.1| Zea mays PCO079032 mRNA sequence
          Length = 2077

 Score =  432 bits (218), Expect = e-118
 Identities = 326/362 (90%)
 Strand = Plus / Plus

                                                                       
Query: 21  gtgcacttctgggcggcctggtgcgaggcctccaagcagatggacgaggtcttcgcccac 80
           ||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||
Sbjct: 329 gtgcacttctgggcgtcctggtgcgaggcgtccaagcagatggacgaggtcttcgcgcac 388

                                                                       
Query: 81  ctcgccgtcgacttcccccacgcgctcttcctcagggttgaagctgaagaacaaccggaa 140
           ||||||||||||||||||||||||  ||||||| |||||||||||||||||||||| |||
Sbjct: 389 ctcgccgtcgacttcccccacgcggccttcctccgggttgaagctgaagaacaacctgaa 448

                                                                       
Query: 141 atttcagaggcatatggagttacagcagtgccatactttgttttctgcaaggaaggcaaa 200
           || |||||||| |||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct: 449 atatcagaggcgtatggagttacagcggtgccatattttgttttctgcaaggaaggaaaa 508

                                                                       
Query: 201 cctgttgataccttggagggcgcaaacccagccagcctggccaataaggttgcaaagtta 260
             ||| ||||| |||||||| | |||||||||||||||||||||||||||||||||  ||
Sbjct: 509 attgtcgatactttggagggagtaaacccagccagcctggccaataaggttgcaaaagta 568

                                                                       
Query: 261 gctgggcctgccaatgttgctcagtctgctgtacctgctagcttgggggtggctgccggg 320
           ||||||||||| | ||||||| |||||||||||||||||||| | || || ||||| |||
Sbjct: 569 gctgggcctgctagtgttgctgagtctgctgtacctgctagccttggagtcgctgctggg 628

                                                                       
Query: 321 cctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatcttctgctgctgaa 380
           ||||||||||| |||||  ||||| | ||||||| || ||||||||||||||||| ||||
Sbjct: 629 cctgctgtacttgaaaacatccaaaagatggcacagcgaaatggatcttctgctgttgaa 688

             
Query: 381 ag 382
           ||
Sbjct: 689 ag 690



 Score =  174 bits (88), Expect = 2e-40
 Identities = 151/172 (87%)
 Strand = Plus / Plus

                                                                       
Query: 388 tgaagaagcgtttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaa 447
           |||| ||||| |||||||||||||||||||||||||| ||  | ||||||||||||||||
Sbjct: 720 tgaataagcgattggagcagcttgtcaattcccatcccgtgtttttatttatgaagggaa 779

                                                                       
Query: 448 atccaggagaaccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaag 507
             |||| | ||||||||||||| |||||||| |  ||| |||||||||||||||||||||
Sbjct: 780 ccccagaacaaccaaggtgtggtttcagccgtaaagtgattgacattttgaagcaggaag 839

                                                               
Query: 508 gtgttgaatttgggagctttgacatcctttcagataatgaagtacgtgaagg 559
           | ||  ||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct: 840 gggtgaaatttgggagctttgacatccttacagataatgatgttcgtgaagg 891

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>gb|AC079888.10| Oryza sativa chromosome 10 BAC OSJNBa0078O01 genomic sequence, complete
             sequence
          Length = 146664

 Score =  206 bits (104), Expect = 6e-50
 Identities = 164/184 (89%)
 Strand = Plus / Plus

                                                                         
Query: 190   aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 249
             ||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||||||
Sbjct: 86068 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 86127

                                                                         
Query: 250   ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 309
             ||||||||||||||||||||||||  |||||| |||||||||| ||||||||| |||| |
Sbjct: 86128 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 86187

                                                                         
Query: 310   tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 369
             ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| |||
Sbjct: 86188 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 86247

                 
Query: 370   ctgc 373
             ||||
Sbjct: 86248 ctgc 86251



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                         
Query: 399   ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
             |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 86286 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 86345

                                                                         
Query: 459   ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
             ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 86346 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 86405

                                                      
Query: 519   gggagctttgacatcctttcagataatgaagtacgtgaagg 559
             |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 86406 gggagctttgacatcctaacagataacgatgtacgtgaagg 86446



 Score =  168 bits (85), Expect = 1e-38
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                         
Query: 6     gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
             |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 84047 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 84106

                                                                  
Query: 66    gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 118
             ||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 84107 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 84159



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                         
Query: 116   ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 175
             |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 85333 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 85392

                        
Query: 176   ctttgttttct 186
              ||||||||||
Sbjct: 85393 ttttgttttct 85403

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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score =  206 bits (104), Expect = 6e-50
 Identities = 164/184 (89%)
 Strand = Plus / Plus

                                                                            
Query: 190      aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 249
                ||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||||||
Sbjct: 18582657 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 18582716

                                                                            
Query: 250      ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 309
                ||||||||||||||||||||||||  |||||| |||||||||| ||||||||| |||| |
Sbjct: 18582717 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 18582776

                                                                            
Query: 310      tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 369
                ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| |||
Sbjct: 18582777 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 18582836

                    
Query: 370      ctgc 373
                ||||
Sbjct: 18582837 ctgc 18582840



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                            
Query: 399      ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
                |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 18582875 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 18582934

                                                                            
Query: 459      ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
                ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 18582935 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 18582994

                                                         
Query: 519      gggagctttgacatcctttcagataatgaagtacgtgaagg 559
                |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 18582995 gggagctttgacatcctaacagataacgatgtacgtgaagg 18583035



 Score =  168 bits (85), Expect = 1e-38
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                            
Query: 6        gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 18580636 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 18580695

                                                                     
Query: 66       gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 118
                ||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 18580696 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18580748



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                            
Query: 116      ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 175
                |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18581922 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18581981

                           
Query: 176      ctttgttttct 186
                 ||||||||||
Sbjct: 18581982 ttttgttttct 18581992

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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score =  206 bits (104), Expect = 6e-50
 Identities = 164/184 (89%)
 Strand = Plus / Plus

                                                                            
Query: 190      aggaaggcaaacctgttgataccttggagggcgcaaacccagccagcctggccaataagg 249
                ||||||| ||| ||||||||||  ||||||| ||||| ||||||||| ||||||||||||
Sbjct: 18593110 aggaaggtaaaactgttgatactctggagggtgcaaatccagccagcttggccaataagg 18593169

                                                                            
Query: 250      ttgcaaagttagctgggcctgccaatgttgctcagtctgctgtacctgctagcttggggg 309
                ||||||||||||||||||||||||  |||||| |||||||||| ||||||||| |||| |
Sbjct: 18593170 ttgcaaagttagctgggcctgccagcgttgctgagtctgctgtgcctgctagcctgggtg 18593229

                                                                            
Query: 310      tggctgccgggcctgctgtactcgaaaaagtccaagaaatggcacggcaaaatggatctt 369
                ||||||| |||||||||||||| ||||| || ||||| ||||||| |||||||||| |||
Sbjct: 18593230 tggctgctgggcctgctgtacttgaaaaggttcaagagatggcacagcaaaatggagctt 18593289

                    
Query: 370      ctgc 373
                ||||
Sbjct: 18593290 ctgc 18593293



 Score =  168 bits (85), Expect = 1e-38
 Identities = 142/161 (88%)
 Strand = Plus / Plus

                                                                            
Query: 399      ttggagcagcttgtcaattcccatcctgtcatcttatttatgaagggaaatccaggagaa 458
                |||||||||||||||||||||||||| ||| ||||||||||||||||||  || |   ||
Sbjct: 18593328 ttggagcagcttgtcaattcccatcccgtcttcttatttatgaagggaacccctgagcaa 18593387

                                                                            
Query: 459      ccaaggtgtgggttcagccgaagggtggttgacattttgaagcaggaaggtgttgaattt 518
                ||||||||||| ||||| ||||  || |||||| |||||||||||||||| |||||||||
Sbjct: 18593388 ccaaggtgtggtttcagtcgaaaagtagttgacgttttgaagcaggaaggagttgaattt 18593447

                                                         
Query: 519      gggagctttgacatcctttcagataatgaagtacgtgaagg 559
                |||||||||||||||||  ||||||| || |||||||||||
Sbjct: 18593448 gggagctttgacatcctaacagataacgatgtacgtgaagg 18593488



 Score =  168 bits (85), Expect = 1e-38
 Identities = 106/113 (93%)
 Strand = Plus / Plus

                                                                            
Query: 6        gcgcgggccgccgcggtgcacttctgggcggcctggtgcgaggcctccaagcagatggac 65
                |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 18591089 gcgcgggccgccgcggtgcacttctgggcggcgtggtgcgaggcgtccaagcagatggac 18591148

                                                                     
Query: 66       gaggtcttcgcccacctcgccgtcgacttcccccacgcgctcttcctcagggt 118
                ||||||||||| |||||||||||||||||| |||||||  |||||||| ||||
Sbjct: 18591149 gaggtcttcgcgcacctcgccgtcgacttctcccacgccgtcttcctccgggt 18591201



 Score =  117 bits (59), Expect = 4e-23
 Identities = 68/71 (95%)
 Strand = Plus / Plus

                                                                            
Query: 116      ggttgaagctgaagaacaaccggaaatttcagaggcatatggagttacagcagtgccata 175
                |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 18592375 ggttgaagctgaggaacaacccgaaatttcagaggcatatggagttacagcagtgccata 18592434

                           
Query: 176      ctttgttttct 186
                 ||||||||||
Sbjct: 18592435 ttttgttttct 18592445

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>gb|BT018250.1| Zea mays clone EL01N0563G06.c mRNA sequence
          Length = 866

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 519 gggagctttgacatcctttcagataatga 547
           |||||||||||||||||| ||||||||||
Sbjct: 14  gggagctttgacatccttacagataatga 42

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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                       
Query: 2       cggcgcgcgggccgccgcggtgca 25
               ||||||||||||||||||||||||
Sbjct: 3458278 cggcgcgcgggccgccgcggtgca 3458255

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>gb|AC127689.4| Mus musculus BAC clone RP24-206I5 from chromosome 5, complete sequence
          Length = 155413

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 333   gaaaaagtccaagaaatggcac 354
             ||||||||||||||||||||||
Sbjct: 18372 gaaaaagtccaagaaatggcac 18351

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>gb|AC158945.6| Mus musculus chromosome 5, clone RP23-286J20, complete sequence
          Length = 210182

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 333  gaaaaagtccaagaaatggcac 354
            ||||||||||||||||||||||
Sbjct: 5746 gaaaaagtccaagaaatggcac 5767

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>gb|AC159012.2| Gallus gallus BAC clone CH261-5N5 from chromosome unknown, complete
              sequence
          Length = 231341

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 496    tgaagcaggaaggtgttgaatt 517
              ||||||||||||||||||||||
Sbjct: 132535 tgaagcaggaaggtgttgaatt 132556

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>emb|CR383660.9| Zebrafish DNA sequence from clone DKEY-1H22 in linkage group 14,
             complete sequence
          Length = 139631

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 365   atcttctgctgctgaaagtac 385
             |||||||||||||||||||||
Sbjct: 74747 atcttctgctgctgaaagtac 74727

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>gb|AC109666.7| Rattus norvegicus 4 BAC CH230-252C14 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 214386

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 480    agggtggttgacattttgaag 500
              |||||||||||||||||||||
Sbjct: 168339 agggtggttgacattttgaag 168359

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>emb|Z99107.2|BSUB0004 Bacillus subtilis complete genome (section 4 of 21): from 611631 to
             813719
          Length = 202089

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 484   tggttgacattttgaagcaggaagg 508
             ||||||||||||||||||| |||||
Sbjct: 17346 tggttgacattttgaagcatgaagg 17370

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>gb|AY278739.1| Rattus norvegicus paraplegin (Spg7) mRNA, complete cds
          Length = 2479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 cctcagggttgaagctgaagaacaa 134
           ||||||||||||||| |||||||||
Sbjct: 359 cctcagggttgaagcagaagaacaa 383

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>emb|BX548054.19| Zebrafish DNA sequence from clone CH211-237N4 in linkage group 14,
             complete sequence
          Length = 128658

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 365   atcttctgctgctgaaagtac 385
             |||||||||||||||||||||
Sbjct: 42691 atcttctgctgctgaaagtac 42711

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>gb|AC118347.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0043E10, complete sequence
          Length = 124591

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 83    cgccgtcgacttcccccacgc 103
             |||||||||||||||||||||
Sbjct: 67129 cgccgtcgacttcccccacgc 67149

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>gb|AC011446.6|AC011446 Homo sapiens chromosome 19 clone CTC-250I14, complete sequence
          Length = 115932

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 148   aggcatatggagttacagcagtgcc 172
             |||||||||||| ||||||||||||
Sbjct: 40140 aggcatatggagatacagcagtgcc 40116

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 83       cgccgtcgacttcccccacgc 103
                |||||||||||||||||||||
Sbjct: 22127575 cgccgtcgacttcccccacgc 22127555

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>ref|NM_181388.2| Rattus norvegicus spastic paraplegia 7 homolog (human) (Spg7), mRNA
          Length = 2479

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 110 cctcagggttgaagctgaagaacaa 134
           ||||||||||||||| |||||||||
Sbjct: 359 cctcagggttgaagcagaagaacaa 383

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>dbj|AP002379.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-463F4, complete
              sequence
          Length = 215986

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 508    gtgttgaatttgggagctttg 528
              |||||||||||||||||||||
Sbjct: 197061 gtgttgaatttgggagctttg 197081

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 83       cgccgtcgacttcccccacgc 103
                |||||||||||||||||||||
Sbjct: 22437486 cgccgtcgacttcccccacgc 22437466

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>dbj|D88802.1| Bacillus subtilis DNA for phoB-rrnE-groESL region, complete cds
          Length = 36308

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 484   tggttgacattttgaagcaggaagg 508
             ||||||||||||||||||| |||||
Sbjct: 15447 tggttgacattttgaagcatgaagg 15471

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>gb|AC166710.7| Mus musculus chromosome 1, clone RP24-252K15, complete sequence
          Length = 156244

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    ctgctagcttgggggtggct 314
              ||||||||||||||||||||
Sbjct: 106649 ctgctagcttgggggtggct 106668

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>gb|BT017401.1| Zea mays clone EL01N0329A09.c mRNA sequence
          Length = 1199

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 atccaggagaaccaaggtgt 467
           ||||||||||||||||||||
Sbjct: 869 atccaggagaaccaaggtgt 888

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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 70     tcttcgcccacctcgccgtc 89
              ||||||||||||||||||||
Sbjct: 728189 tcttcgcccacctcgccgtc 728170

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>gb|AC139562.8| Mus musculus chromosome 5, clone RP24-180G11, complete sequence
          Length = 168158

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    tcccatcctgtcatcttatt 436
              ||||||||||||||||||||
Sbjct: 126122 tcccatcctgtcatcttatt 126141

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>gb|CP000233.1| Lactobacillus salivarius subsp. salivarius UCC118, complete genome
          Length = 1827111

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 534    ctttcagataatgaagtacgtgaa 557
              |||||| |||||||||||||||||
Sbjct: 967478 ctttcacataatgaagtacgtgaa 967455

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>ref|XM_389623.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG09447.1)
            partial mRNA
          Length = 2970

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 50   ctccaagcagatggacgagg 69
            ||||||||||||||||||||
Sbjct: 2895 ctccaagcagatggacgagg 2914

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>gb|AC126439.3| Mus musculus BAC clone RP24-290I17 from chromosome 14, complete sequence
          Length = 163978

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 175    actttgttttctgcaaggaa 194
              ||||||||||||||||||||
Sbjct: 119332 actttgttttctgcaaggaa 119351

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>gb|DQ096844.1| Xenopus laevis lapl06 mRNA, complete sequence
          Length = 843

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 191 ggaaggcaaacctgttgata 210
           ||||||||||||||||||||
Sbjct: 556 ggaaggcaaacctgttgata 575

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>gb|AC103876.2| Homo sapiens chromosome 15, clone CTD-2282O12, complete sequence
          Length = 113199

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 231   gccagcctggccaataaggt 250
             ||||||||||||||||||||
Sbjct: 23992 gccagcctggccaataaggt 23973

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>gb|AF312994.1|AF312994 Mus musculus chromosome 1 clone MML, complete sequence
          Length = 228283

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   aagcaggaaggtgttgaatt 517
             ||||||||||||||||||||
Sbjct: 38132 aagcaggaaggtgttgaatt 38151

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>dbj|AK048306.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130048B16 product:unclassifiable, full
            insert sequence
          Length = 2785

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 498  aagcaggaaggtgttgaatt 517
            ||||||||||||||||||||
Sbjct: 1541 aagcaggaaggtgttgaatt 1560

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>emb|BX935083.2| Gallus gallus finished cDNA, clone ChEST74d16
          Length = 984

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 511 ttgaatttgggagctttgac 530
           ||||||||||||||||||||
Sbjct: 839 ttgaatttgggagctttgac 820

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 1       gcggcgcgcgggccgccgcg 20
               ||||||||||||||||||||
Sbjct: 4519324 gcggcgcgcgggccgccgcg 4519305

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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 4       gcgcgcgggccgccgcggtg 23
               ||||||||||||||||||||
Sbjct: 3290947 gcgcgcgggccgccgcggtg 3290928

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>gb|AC120860.7| Mus musculus chromosome 1, clone RP23-26I10, complete sequence
          Length = 188326

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    aagcaggaaggtgttgaatt 517
              ||||||||||||||||||||
Sbjct: 108654 aagcaggaaggtgttgaatt 108635

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>gb|AY108979.1| Zea mays PCO080401 mRNA sequence
          Length = 602

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 448 atccaggagaaccaaggtgt 467
           ||||||||||||||||||||
Sbjct: 519 atccaggagaaccaaggtgt 538

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>gb|AC162461.6| Mus musculus chromosome 5, clone RP23-265I19, complete sequence
          Length = 233632

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   tcccatcctgtcatcttatt 436
             ||||||||||||||||||||
Sbjct: 14204 tcccatcctgtcatcttatt 14223

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>emb|AL928922.7| Mouse DNA sequence from clone RP23-431J22 on chromosome 2, complete
              sequence
          Length = 203047

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 496    tgaagcaggaaggtgttgaatttg 519
              |||||||||||||| |||||||||
Sbjct: 185531 tgaagcaggaaggtcttgaatttg 185554

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>dbj|AB070951.1| Streptomyces avermitilis peptide-2 biosynthetic gene cluster
          Length = 32748

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 1    gcggcgcgcgggccgccgcg 20
            ||||||||||||||||||||
Sbjct: 1536 gcggcgcgcgggccgccgcg 1555


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,818,030
Number of Sequences: 3902068
Number of extensions: 5818030
Number of successful extensions: 155798
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 155135
Number of HSP's gapped (non-prelim): 656
length of query: 567
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 544
effective length of database: 17,143,297,704
effective search space: 9325953950976
effective search space used: 9325953950976
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result