Clone Name | baal15o12 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK110932.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-173-F11, full insert sequence Length = 1425 Score = 414 bits (209), Expect = e-112 Identities = 457/539 (84%), Gaps = 3/539 (0%) Strand = Plus / Plus Query: 38 gagatgctcgcggccgcggctgtgagccaggtcgcccgcaagatcggcgaaatcatcggc 97 |||||||| | ||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 69 gagatgcttgtggccgcggcggtgagccaggtcgcccggaagatcaacggcatcgtcggc 128 Query: 98 gcggcgcagggcgaggtcacgctgtgctgcagtttcagcgacgatctggagagcataaag 157 | |||||||||||||| | ||||||||||| ||||||||||||| ||||| |||| ||| Sbjct: 129 gtcgcgcagggcgaggtgaagctgtgctgcaatttcagcgacgatttggagggcatcaag 188 Query: 158 gacactctggtgtacctagaagacctgctgaaaaatgcggagaggaactccttcggaagc 217 || || |||||||||| ||| ||| |||||||| || |||| ||||||||||||||| Sbjct: 189 gataccttggtgtacctggaaacccttctgaaaaacgccgagaacaactccttcggaagc 248 Query: 218 gagagggcgaacctgcggcactggctcacccagatcaagtccctggccttcgacatcgaa 277 || ||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| Sbjct: 249 gacagggccaacctgcgacactggctcggccagatcaagtccctggcttacgacatcgaa 308 Query: 278 gacatggttgacgactactactcttccaaggagcagtttgaagggagcagcagctatgct 337 || || ||||| | ||||||||||||||||||||||| || ||| ||||||||||| Sbjct: 309 gatatcgttgatgggtactactcttccaaggagcagttcgatggg---ggcagctatgct 365 Query: 338 cagaagggatcattgttctgctcactttccaatcctgtgatttcgaaagttagcatggtt 397 |||||||| ||||| ||||||||||| || ||||| || || ||||| |||||||||| Sbjct: 366 cagaaggggtcattattctgctcactatcgaatccaatgcttctgaaaggtagcatggtt 425 Query: 398 cataagatgaaatccaagagagagttgttgcagacaaggcaacacttgcctaatcaatat 457 |||||||||| |||||||| ||| |||| ||| ||||||||| ||||| ||||| ||| Sbjct: 426 tataagatgaagtccaagagggagatgttacagcaaaggcaacaattgcccaatcagtat 485 Query: 458 catttcatttcacatattaactcagtggtggattttgatgagaagcaaacaacatcatac 517 |||||| |||||||||| ||||||| ||| ||||||| ||||||||||||||||||||| Sbjct: 486 catttcctttcacatatcaactcagcagtgaattttgaggagaagcaaacaacatcatac 545 Query: 518 agaaatagtgacattactcttttcgggagagatagagacttagaaaatctcatggacat 576 ||||||| ||||||| | || | ||||| ||| ||||||||| |||||||||||||| Sbjct: 546 agaaatactgacattgcaattgttgggagggatgcagacttagataatctcatggacat 604
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 240 bits (121), Expect = 4e-60 Identities = 261/307 (85%), Gaps = 3/307 (0%) Strand = Plus / Minus Query: 38 gagatgctcgcggccgcggctgtgagccaggtcgcccgcaagatcggcgaaatcatcggc 97 |||||||| | ||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 9621754 gagatgcttgtggccgcggcggtgagccaggtcgcccggaagatcaacggcatcgtcggc 9621695 Query: 98 gcggcgcagggcgaggtcacgctgtgctgcagtttcagcgacgatctggagagcataaag 157 | |||||||||||||| | ||||||||||| ||||||||||||| ||||| |||| ||| Sbjct: 9621694 gtcgcgcagggcgaggtgaagctgtgctgcaatttcagcgacgatttggagggcatcaag 9621635 Query: 158 gacactctggtgtacctagaagacctgctgaaaaatgcggagaggaactccttcggaagc 217 || || |||||||||| ||| ||| |||||||| || |||| ||||||||||||||| Sbjct: 9621634 gataccttggtgtacctggaaacccttctgaaaaacgccgagaacaactccttcggaagc 9621575 Query: 218 gagagggcgaacctgcggcactggctcacccagatcaagtccctggccttcgacatcgaa 277 || ||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| Sbjct: 9621574 gacagggccaacctgcgacactggctcggccagatcaagtccctggcttacgacatcgaa 9621515 Query: 278 gacatggttgacgactactactcttccaaggagcagtttgaagggagcagcagctatgct 337 || || ||||| | ||||||||||||||||||||||| || ||| ||||||||||| Sbjct: 9621514 gatatcgttgatgggtactactcttccaaggagcagttcgatggg---ggcagctatgct 9621458 Query: 338 cagaagg 344 ||||||| Sbjct: 9621457 cagaagg 9621451 Score = 180 bits (91), Expect = 3e-42 Identities = 199/235 (84%) Strand = Plus / Minus Query: 342 agggatcattgttctgctcactttccaatcctgtgatttcgaaagttagcatggttcata 401 |||| ||||| ||||||||||| || ||||| || || ||||| |||||||||| ||| Sbjct: 9620430 aggggtcattattctgctcactatcgaatccaatgcttctgaaaggtagcatggtttata 9620371 Query: 402 agatgaaatccaagagagagttgttgcagacaaggcaacacttgcctaatcaatatcatt 461 ||||||| |||||||| ||| |||| ||| ||||||||| ||||| ||||| ||||||| Sbjct: 9620370 agatgaagtccaagagggagatgttacagcaaaggcaacaattgcccaatcagtatcatt 9620311 Query: 462 tcatttcacatattaactcagtggtggattttgatgagaagcaaacaacatcatacagaa 521 || |||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||| Sbjct: 9620310 tcctttcacatatcaactcagcagtgaattttgaggagaagcaaacaacatcatacagaa 9620251 Query: 522 atagtgacattactcttttcgggagagatagagacttagaaaatctcatggacat 576 ||| ||||||| | || | ||||| ||| ||||||||| |||||||||||||| Sbjct: 9620250 atactgacattgcaattgttgggagggatgcagacttagataatctcatggacat 9620196
>dbj|AP005811.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0706E03 Length = 188028 Score = 240 bits (121), Expect = 4e-60 Identities = 261/307 (85%), Gaps = 3/307 (0%) Strand = Plus / Minus Query: 38 gagatgctcgcggccgcggctgtgagccaggtcgcccgcaagatcggcgaaatcatcggc 97 |||||||| | ||||||||| ||||||||||||||||| |||||| || ||| ||||| Sbjct: 61851 gagatgcttgtggccgcggcggtgagccaggtcgcccggaagatcaacggcatcgtcggc 61792 Query: 98 gcggcgcagggcgaggtcacgctgtgctgcagtttcagcgacgatctggagagcataaag 157 | |||||||||||||| | ||||||||||| ||||||||||||| ||||| |||| ||| Sbjct: 61791 gtcgcgcagggcgaggtgaagctgtgctgcaatttcagcgacgatttggagggcatcaag 61732 Query: 158 gacactctggtgtacctagaagacctgctgaaaaatgcggagaggaactccttcggaagc 217 || || |||||||||| ||| ||| |||||||| || |||| ||||||||||||||| Sbjct: 61731 gataccttggtgtacctggaaacccttctgaaaaacgccgagaacaactccttcggaagc 61672 Query: 218 gagagggcgaacctgcggcactggctcacccagatcaagtccctggccttcgacatcgaa 277 || ||||| |||||||| ||||||||| |||||||||||||||||| | |||||||||| Sbjct: 61671 gacagggccaacctgcgacactggctcggccagatcaagtccctggcttacgacatcgaa 61612 Query: 278 gacatggttgacgactactactcttccaaggagcagtttgaagggagcagcagctatgct 337 || || ||||| | ||||||||||||||||||||||| || ||| ||||||||||| Sbjct: 61611 gatatcgttgatgggtactactcttccaaggagcagttcgatggg---ggcagctatgct 61555 Query: 338 cagaagg 344 ||||||| Sbjct: 61554 cagaagg 61548 Score = 180 bits (91), Expect = 3e-42 Identities = 199/235 (84%) Strand = Plus / Minus Query: 342 agggatcattgttctgctcactttccaatcctgtgatttcgaaagttagcatggttcata 401 |||| ||||| ||||||||||| || ||||| || || ||||| |||||||||| ||| Sbjct: 60527 aggggtcattattctgctcactatcgaatccaatgcttctgaaaggtagcatggtttata 60468 Query: 402 agatgaaatccaagagagagttgttgcagacaaggcaacacttgcctaatcaatatcatt 461 ||||||| |||||||| ||| |||| ||| ||||||||| ||||| ||||| ||||||| Sbjct: 60467 agatgaagtccaagagggagatgttacagcaaaggcaacaattgcccaatcagtatcatt 60408 Query: 462 tcatttcacatattaactcagtggtggattttgatgagaagcaaacaacatcatacagaa 521 || |||||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||| Sbjct: 60407 tcctttcacatatcaactcagcagtgaattttgaggagaagcaaacaacatcatacagaa 60348 Query: 522 atagtgacattactcttttcgggagagatagagacttagaaaatctcatggacat 576 ||| ||||||| | || | ||||| ||| ||||||||| |||||||||||||| Sbjct: 60347 atactgacattgcaattgttgggagggatgcagacttagataatctcatggacat 60293
>dbj|AB107360.1| Oryza sativa (japonica cultivar-group) DNA, STS marker, clone: ARIF1AK Length = 1662 Score = 127 bits (64), Expect = 5e-26 Identities = 162/194 (83%), Gaps = 3/194 (1%) Strand = Plus / Minus Query: 342 agggatcattgttctgctcactttccaatcctgtgatttcgaaagttagcatggttcata 401 |||| ||||| |||||||| || |||||||| || || ||||| |||||||||| ||| Sbjct: 1092 aggggtcattattctgctcgctatccaatccaatgcttctgaaaggtagcatggtttata 1033 Query: 402 agatgaaatccaagagagagttgttgcagacaaggcaacacttgcctaatcaatatcatt 461 |||||||||||||||||||| || | ||| ||| ||||| ||||| ||||| ||||||| Sbjct: 1032 agatgaaatccaagagagagatgctacagcaaagccaacagttgcccaatcagtatcatt 973 Query: 462 tcatttcacatattaactcagtggtg---gattttgatgagaagcaaacaacatcataca 518 || ||||| |||| || |||| ||| ||||||| |||||||||||||||||||||| Sbjct: 972 tcctttcatatatcaattcagctgtgcattattttgaggagaagcaaacaacatcataca 913 Query: 519 gaaatagtgacatt 532 |||||| ||||||| Sbjct: 912 gaaatactgacatt 899
>gb|AC129717.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0079H23, complete sequence Length = 191765 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 ttaactcagtggtggattttga 495 |||||||||||||||||||||| Sbjct: 53858 ttaactcagtggtggattttga 53879
>gb|AC135925.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0560C03, complete sequence Length = 177861 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 ttaactcagtggtggattttga 495 |||||||||||||||||||||| Sbjct: 110286 ttaactcagtggtggattttga 110307
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Plus Query: 474 ttaactcagtggtggattttga 495 |||||||||||||||||||||| Sbjct: 27178890 ttaactcagtggtggattttga 27178911
>gb|AC173470.3| Dasypus novemcinctus clone VMRC5-164N1, complete sequence Length = 75140 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 469 acatattaactcagtggtggat 490 |||||||||||||||||||||| Sbjct: 27623 acatattaactcagtggtggat 27602
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgcaagatcggcgaaatcatcggcg 98 |||||||||||||| |||||||||| Sbjct: 320857 cgcaagatcggcgacatcatcggcg 320881
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 74 cgcaagatcggcgaaatcatcggcg 98 |||||||||||||| |||||||||| Sbjct: 1646660 cgcaagatcggcgacatcatcggcg 1646684
>ref|XM_624992.1| PREDICTED: Apis mellifera similar to hypothetical protein (LOC552618), mRNA Length = 2418 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 489 attttgatgagaagcaaacaa 509 ||||||||||||||||||||| Sbjct: 1659 attttgatgagaagcaaacaa 1639
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 93 tcggcgcggcgcagggcgagg 113 ||||||||||||||||||||| Sbjct: 2862471 tcggcgcggcgcagggcgagg 2862491
>emb|AL157791.4|CNS01RG8 Human chromosome 14 DNA sequence BAC R-647O20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 191960 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 454 atatcatttcatttcacatat 474 ||||||||||||||||||||| Sbjct: 39048 atatcatttcatttcacatat 39068
>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence Length = 2914771 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 cgcaagatcggcgaaatcatcggcg 98 |||||||||||||| |||||||||| Sbjct: 1404855 cgcaagatcggcgacatcatcggcg 1404831
>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome Length = 3997420 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 agatcggcgaaatcatcggc 97 |||||||||||||||||||| Sbjct: 906467 agatcggcgaaatcatcggc 906448
>gb|DQ487109.1| Panax ginseng dehydrin 4 (Dhn4) mRNA, complete cds Length = 1076 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 450 atcaatatcatttcatttca 469 |||||||||||||||||||| Sbjct: 1 atcaatatcatttcatttca 20
>emb|CT025638.1| Pan troglodytes chromosome X clone PTB-083N09 map Xq28, complete sequence Length = 189430 Score = 40.1 bits (20), Expect = 8.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 502 gcaaacaacatcatacagaaatag 525 |||||||||||||| ||||||||| Sbjct: 88280 gcaaacaacatcattcagaaatag 88257
>gb|AC123543.3| Lemur catta clone LB2-212N12, complete sequence Length = 203201 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 aaacaacatcatacagaaat 523 |||||||||||||||||||| Sbjct: 46594 aaacaacatcatacagaaat 46575
>gb|AC092830.7| Homo sapiens 12 BAC RP11-146L7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 164969 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 aaaatctcatggacatgata 580 |||||||||||||||||||| Sbjct: 145232 aaaatctcatggacatgata 145213
>gb|AC127316.3| Mus musculus BAC clone RP23-222G16 from 13, complete sequence Length = 203032 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 513 catacagaaatagtgacatt 532 |||||||||||||||||||| Sbjct: 180519 catacagaaatagtgacatt 180538
>emb|AL139382.12| Human DNA sequence from clone RP11-86N24 on chromosome 13 Contains the TNFSF11 gene for tumor necrosis factor (ligand) superfamily, member 11 and a CpG island, complete sequence Length = 200724 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 544 gagagatagagacttagaaa 563 |||||||||||||||||||| Sbjct: 69457 gagagatagagacttagaaa 69476
>ref|XM_961563.1| PREDICTED: Tribolium castaneum similar to apoptosis antagonizing transcription factor (LOC655070), mRNA Length = 1542 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 504 aaacaacatcatacagaaat 523 |||||||||||||||||||| Sbjct: 927 aaacaacatcatacagaaat 946
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 gcaagatcggcgaaatcatc 94 |||||||||||||||||||| Sbjct: 4876759 gcaagatcggcgaaatcatc 4876778
>gb|AC087312.8| Homo sapiens 12p BAC RP11-615I16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 148543 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 aaaatctcatggacatgata 580 |||||||||||||||||||| Sbjct: 136734 aaaatctcatggacatgata 136753
>gb|AC092306.2| Homo sapiens chromosome 19 clone LLNLR-231D4, complete sequence Length = 35144 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ctgctcactttccaatcctg 374 |||||||||||||||||||| Sbjct: 7376 ctgctcactttccaatcctg 7357
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 atcggcgcggcgcagggcga 111 |||||||||||||||||||| Sbjct: 1880994 atcggcgcggcgcagggcga 1881013
>gb|DP000004.1| Lemur catta target 1 genomic scaffold Length = 1399362 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 504 aaacaacatcatacagaaat 523 |||||||||||||||||||| Sbjct: 1051937 aaacaacatcatacagaaat 1051918
>gb|AC154358.2| Mus musculus BAC clone RP23-173M16 from chromosome 13, complete sequence Length = 193594 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 513 catacagaaatagtgacatt 532 |||||||||||||||||||| Sbjct: 182430 catacagaaatagtgacatt 182411
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 75 gcaagatcggcgaaatcatc 94 |||||||||||||||||||| Sbjct: 1224697 gcaagatcggcgaaatcatc 1224678
>gb|AC016723.11| Homo sapiens BAC clone RP11-334N15 from 2, complete sequence Length = 202001 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 ctttccaatcctgtgatttc 381 |||||||||||||||||||| Sbjct: 15013 ctttccaatcctgtgatttc 15032
>gb|L34832.1|TKYP21CBP Meleagris gallopavo clacium binding protein (p21) mRNA, 3' end Length = 628 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 catcggcgcggcgcagggcg 110 |||||||||||||||||||| Sbjct: 188 catcggcgcggcgcagggcg 169
>emb|AL772333.5| Mouse DNA sequence from clone RP23-305E1 on chromosome 1, complete sequence Length = 142174 Score = 40.1 bits (20), Expect = 8.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 153 taaaggacactctggtgtac 172 |||||||||||||||||||| Sbjct: 29678 taaaggacactctggtgtac 29659 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,312,590 Number of Sequences: 3902068 Number of extensions: 5312590 Number of successful extensions: 105629 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 104910 Number of HSP's gapped (non-prelim): 712 length of query: 601 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 578 effective length of database: 17,143,297,704 effective search space: 9908826072912 effective search space used: 9908826072912 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)