ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name baal28a18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KCO1_ARATH (Q8LBL1) Calcium-activated outward-rectifying potassi... 70 2e-12
2KCO3_ARATH (Q9XFR0) Probable calcium-activated outward-rectifyin... 38 0.007
3KCO6_ARATH (Q9SVV6) Probable calcium-activated outward-rectifyin... 35 0.036
4KCO2_ARATH (Q9FL25) Probable calcium-activated outward-rectifyin... 32 0.39
5SPE2A_STRPU (P04110) SPEC 2A protein 30 1.5
6PRVU_CHICK (P43305) Parvalbumin, thymic CPV3 (Parvalbumin 3) 28 4.4
7SPE2C_STRPU (P04111) SPEC 2C protein 27 9.7

>KCO1_ARATH (Q8LBL1) Calcium-activated outward-rectifying potassium channel 1|
           (AtKCO1)
          Length = 363

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 36/68 (52%), Positives = 43/68 (63%)
 Frame = +2

Query: 2   RTTNTDLEAADLDGDRRVGAAEFVLYKLKELGKXXXXXXXXXXXXXXXLDADHNGTLSPS 181
           R TN DLEAADLD D  VGAAEF++YKLKE+GK               LD D +GTL+ S
Sbjct: 291 RITNNDLEAADLDEDGVVGAAEFIVYKLKEMGKIDEKDISGIMDEFEQLDYDESGTLTTS 350

Query: 182 DLAIAQAT 205
           D+ +AQ T
Sbjct: 351 DIVLAQTT 358



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>KCO3_ARATH (Q9XFR0) Probable calcium-activated outward-rectifying potassium|
           channel 3 (AtKCO3)
          Length = 260

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 20/57 (35%), Positives = 28/57 (49%)
 Frame = +2

Query: 26  AADLDGDRRVGAAEFVLYKLKELGKXXXXXXXXXXXXXXXLDADHNGTLSPSDLAIA 196
           AAD+D D R+  AEF +YKLK++ K               LD   +G ++  DL  A
Sbjct: 201 AADIDNDGRLSLAEFAIYKLKQMEKITQEDFIQICNQFDKLDRTQSGRITLVDLTTA 257



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>KCO6_ARATH (Q9SVV6) Probable calcium-activated outward-rectifying potassium|
           channel 6 (AtKCO6)
          Length = 436

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 20/54 (37%), Positives = 27/54 (50%)
 Frame = +2

Query: 26  AADLDGDRRVGAAEFVLYKLKELGKXXXXXXXXXXXXXXXLDADHNGTLSPSDL 187
           AAD+D +  V  AE+V+YKLKE+ K               LD   NG ++  DL
Sbjct: 376 AADIDNNGCVSKAEYVIYKLKEMEKITDKDILPISKQFDKLDRCSNGKITLLDL 429



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>KCO2_ARATH (Q9FL25) Probable calcium-activated outward-rectifying potassium|
           channel 2 (AtKCO2)
          Length = 443

 Score = 32.0 bits (71), Expect = 0.39
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +2

Query: 29  ADLDGDRRVGAAEFVLYKLKELGKXXXXXXXXXXXXXXXLDADHNGTLSPSDL 187
           AD+D +  V  AEFV+YKLK++ K               LD  ++G ++  DL
Sbjct: 377 ADIDCNGCVSKAEFVIYKLKKMDKITEKDINPIGFQFDKLDRTNSGRITLLDL 429



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>SPE2A_STRPU (P04110) SPEC 2A protein|
          Length = 150

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 17/57 (29%), Positives = 27/57 (47%)
 Frame = +2

Query: 32  DLDGDRRVGAAEFVLYKLKELGKXXXXXXXXXXXXXXXLDADHNGTLSPSDLAIAQA 202
           D DG + +  +EF++ K ++                  LD DHNG+LSP +L  A +
Sbjct: 59  DKDGSKDMDFSEFLMRKAEQW----RGREVQLTKAFVDLDKDHNGSLSPQELRTAMS 111



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>PRVU_CHICK (P43305) Parvalbumin, thymic CPV3 (Parvalbumin 3)|
          Length = 109

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = +2

Query: 8   TNTDLEAADLDGDRRVGAAEF 70
           T T L AAD DGD ++GA EF
Sbjct: 83  TKTFLAAADHDGDGKIGAEEF 103



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>SPE2C_STRPU (P04111) SPEC 2C protein|
          Length = 151

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 20  LEAADLDGDRRVGAAEFVLYKLKEL-GKXXXXXXXXXXXXXXXLDADHNGTLSPSDLAIA 196
           +   D DG R V  +E ++ K +++ GK               LD D +G+LSP +L  A
Sbjct: 55  MSMVDKDGSRPVDFSEILMKKAEQMRGKGAQYFKAFDA-----LDTDKSGSLSPEELRTA 109


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,439,918
Number of Sequences: 219361
Number of extensions: 514657
Number of successful extensions: 999
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 80,573,946
effective HSP length: 86
effective length of database: 61,708,900
effective search space used: 1481013600
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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