ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bah23i11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477051.1| Oryza sativa (japonica cultivar-group), mRNA 543 e-151
2dbj|AK064566.1| Oryza sativa (japonica cultivar-group) cDNA clon... 543 e-151
3dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
4dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
5dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic D... 167 6e-38
6ref|NM_180234.2| Arabidopsis thaliana nucleic acid binding AT3G1... 54 6e-04
7ref|NM_112029.3| Arabidopsis thaliana nucleic acid binding AT3G1... 54 6e-04
8gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC... 54 6e-04
9gb|BT006164.1| Arabidopsis thaliana clone RAFL19-58-K08 (R50778)... 54 6e-04
10emb|BX824377.1|CNS0A7VU Arabidopsis thaliana Full-length cDNA Co... 54 6e-04
11dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 54 6e-04
12emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on ch... 42 2.4
13emb|X72734.1|LEERT15 L.esculentum (ERT 15) ripening-related mRNA 42 2.4
14gb|AC102417.11| Mus musculus chromosome 3, clone RP24-499J8, com... 40 9.7
15gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, comp... 40 9.7
16ref|XM_323540.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.7
17ref|XM_956068.1| Neurospora crassa OR74A hypothetical protein (N... 40 9.7
18ref|NM_130869.1| Mus musculus OG2 homeobox gene (Og2x), mRNA 40 9.7
19gb|AF527417.1| Homo sapiens cell division cycle 25A (CDC25A) gen... 40 9.7
20emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chro... 40 9.7
21emb|AL356575.8| Human DNA sequence from clone RP11-340C20 on chr... 40 9.7
22emb|AL139243.11| Human DNA sequence from clone RP11-439D8 on chr... 40 9.7
23emb|BX324172.22| Zebrafish DNA sequence from clone DKEYP-86D6 in... 40 9.7
24emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cos... 40 9.7
25emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosm... 40 9.7
26emb|CR847800.4| Zebrafish DNA sequence from clone DKEY-182M5 in ... 40 9.7
27emb|BX530062.10| Zebrafish DNA sequence from clone DKEY-13M1 in ... 40 9.7
28emb|BX537303.10| Zebrafish DNA sequence from clone DKEYP-73E12, ... 40 9.7
29gb|AE012430.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 9.7
30gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 ma... 40 9.7
31gb|AY355359.1| Rickettsia akari strain ATCC VR-148T surface anti... 40 9.7
32gb|AY061761.1| Mus musculus newborn ovary homeodomain protein (N... 40 9.7
33gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 gen... 40 9.7
34gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 9.7
35gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A... 40 9.7
36dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
38gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, com... 40 9.7
39gb|AC072053.4| Homo sapiens BAC clone RP11-21A5 from 2, complete... 40 9.7
40gb|AC104190.3| Homo sapiens chromosome 3 clone RP11-502L5, compl... 40 9.7
41dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
42dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic D... 40 9.7
43emb|AL929322.6| Zebrafish DNA sequence from clone DKEY-10H23, co... 40 9.7
44emb|X73475.1|BYVMBPA Beet yellows virus (isolate German BYV-G) g... 40 9.7
45gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 9.7
46emb|CR847961.12| Zebrafish DNA sequence from clone DKEY-154B7 in... 40 9.7
47gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, comple... 40 9.7
48gb|M59452.1|BYVVCPG Beet yellows virus coat protein gene, comple... 40 9.7
49dbj|AB034802.1| Pisum sativum OSCPSY mRNA for beta-amyrin syntha... 40 9.7 
>ref|XM_477051.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4068

 Score =  543 bits (274), Expect = e-151
 Identities = 532/618 (86%)
 Strand = Plus / Plus

                                                                        
Query: 57   gagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgcagcggg 116
            |||||| ||||||||||| || || ||||||||||| |||||||||| |||||||| |||
Sbjct: 3348 gagtaggacacgatttacaataacctgtttgaagacgtatgcatcacggattgcagtggg 3407

                                                                        
Query: 117  cgattgtcgtgatggtgttctcttctattcttatcacgagaatcttaggaagttggaact 176
             ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 3408 tgattgccgcgatggtgttctcttctattcttatcatgagaatcttaggaagttggaact 3467

                                                                        
Query: 177  tgtttatgctgatcctgctcaacgattggtgggtgatgttgtcctcttagactgtgaaac 236
              | ||| |||||||||| |||||  | ||||||||||||| ||| ||   |||||||||
Sbjct: 3468 gatctattctgatcctgcccaacggctagtgggtgatgttgcccttttgagctgtgaaac 3527

                                                                        
Query: 237  tgctgttgtgtcagatcgatgtggtagcatatctgtattatcctgccctggactggaagt 296
            ||||||||| ||||||||| | || |||||||||||| | || |||||  || | |||||
Sbjct: 3528 tgctgttgtatcagatcgacgagggagcatatctgtactgtcttgcccaagattagaagt 3587

                                                                        
Query: 297  ttctgaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaaatagc 356
             || ||||||||||| |||||| |||| || || ||||||||||  ||||| |||| |||
Sbjct: 3588 atccgaaagtccagagaagaacctagcggtgcattgttcattttacatgggtgaaacagc 3647

                                                                        
Query: 357  tatgagcatccagaaggctgcatttaagtatcggctatcaattggtgatgagacagaccc 416
            ||||||||||||||||| |||||||||| || ||||  |||||| ||||  |||||| ||
Sbjct: 3648 tatgagcatccagaaggttgcatttaagcattggcttccaattgatgatttgacagaacc 3707

                                                                        
Query: 417  agtgttggaatcagcttataactgtgttgtggcgagtactttgctggggagtgtttttgt 476
            ||||||||| || |  || |||||||| || || || ||| ||||||||||| | |||||
Sbjct: 3708 agtgttggagtcggtatacaactgtgtcgtcgcaagcactctgctggggagtatctttgt 3767

                                                                        
Query: 477  tatgattccactcaccagtgaggagcatcaactgttgcaagatgtccaagaaagactttc 536
            ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 3768 tatgattccactcacaagtgaggagcatcaaatgttgcaagatgtccaagaaagactttc 3827

                                                                        
Query: 537  acttcacccattgactgctccaatcttgggaaatgaccatgcagagtttcgtcgacgtgg 596
              |||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 3828 ggttcacccattgactgctccactcttaggaaatgatcatgcagagtttcgtcgccgtgg 3887

                                                                        
Query: 597  tatcccgtcgggagtgccttcaattctggatggtgacatgctcgtgcaattcttagagct 656
            ||||||||||||||| ||  | ||||||||||| |||||||| ||||| ||| | |||||
Sbjct: 3888 tatcccgtcgggagtaccgcccattctggatggcgacatgcttgtgcagttcctggagct 3947

                              
Query: 657  caccagtgagcaacagca 674
            |||||| || ||||||||
Sbjct: 3948 caccagcgaacaacagca 3965
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>dbj|AK064566.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D04, full
            insert sequence
          Length = 2339

 Score =  543 bits (274), Expect = e-151
 Identities = 532/618 (86%)
 Strand = Plus / Plus

                                                                        
Query: 57   gagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgcagcggg 116
            |||||| ||||||||||| || || ||||||||||| |||||||||| |||||||| |||
Sbjct: 1284 gagtaggacacgatttacaataacctgtttgaagacgtatgcatcacggattgcagtggg 1343

                                                                        
Query: 117  cgattgtcgtgatggtgttctcttctattcttatcacgagaatcttaggaagttggaact 176
             ||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1344 tgattgccgcgatggtgttctcttctattcttatcatgagaatcttaggaagttggaact 1403

                                                                        
Query: 177  tgtttatgctgatcctgctcaacgattggtgggtgatgttgtcctcttagactgtgaaac 236
              | ||| |||||||||| |||||  | ||||||||||||| ||| ||   |||||||||
Sbjct: 1404 gatctattctgatcctgcccaacggctagtgggtgatgttgcccttttgagctgtgaaac 1463

                                                                        
Query: 237  tgctgttgtgtcagatcgatgtggtagcatatctgtattatcctgccctggactggaagt 296
            ||||||||| ||||||||| | || |||||||||||| | || |||||  || | |||||
Sbjct: 1464 tgctgttgtatcagatcgacgagggagcatatctgtactgtcttgcccaagattagaagt 1523

                                                                        
Query: 297  ttctgaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaaatagc 356
             || ||||||||||| |||||| |||| || || ||||||||||  ||||| |||| |||
Sbjct: 1524 atccgaaagtccagagaagaacctagcggtgcattgttcattttacatgggtgaaacagc 1583

                                                                        
Query: 357  tatgagcatccagaaggctgcatttaagtatcggctatcaattggtgatgagacagaccc 416
            ||||||||||||||||| |||||||||| || ||||  |||||| ||||  |||||| ||
Sbjct: 1584 tatgagcatccagaaggttgcatttaagcattggcttccaattgatgatttgacagaacc 1643

                                                                        
Query: 417  agtgttggaatcagcttataactgtgttgtggcgagtactttgctggggagtgtttttgt 476
            ||||||||| || |  || |||||||| || || || ||| ||||||||||| | |||||
Sbjct: 1644 agtgttggagtcggtatacaactgtgtcgtcgcaagcactctgctggggagtatctttgt 1703

                                                                        
Query: 477  tatgattccactcaccagtgaggagcatcaactgttgcaagatgtccaagaaagactttc 536
            ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1704 tatgattccactcacaagtgaggagcatcaaatgttgcaagatgtccaagaaagactttc 1763

                                                                        
Query: 537  acttcacccattgactgctccaatcttgggaaatgaccatgcagagtttcgtcgacgtgg 596
              |||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||
Sbjct: 1764 ggttcacccattgactgctccactcttaggaaatgatcatgcagagtttcgtcgccgtgg 1823

                                                                        
Query: 597  tatcccgtcgggagtgccttcaattctggatggtgacatgctcgtgcaattcttagagct 656
            ||||||||||||||| ||  | ||||||||||| |||||||| ||||| ||| | |||||
Sbjct: 1824 tatcccgtcgggagtaccgcccattctggatggcgacatgcttgtgcagttcctggagct 1883

                              
Query: 657  caccagtgagcaacagca 674
            |||||| || ||||||||
Sbjct: 1884 caccagcgaacaacagca 1901
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  167 bits (84), Expect = 6e-38
 Identities = 105/112 (93%)
 Strand = Plus / Minus

                                                                           
Query: 492     cagtgaggagcatcaactgttgcaagatgtccaagaaagactttcacttcacccattgac 551
               |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 5600566 cagtgaggagcatcaaatgttgcaagatgtccaagaaagactttcggttcacccattgac 5600507

                                                                   
Query: 552     tgctccaatcttgggaaatgaccatgcagagtttcgtcgacgtggtatcccg 603
               ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 5600506 tgctccactcttaggaaatgatcatgcagagtttcgtcgccgtggtatcccg 5600455



 Score =  111 bits (56), Expect = 3e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                           
Query: 57      gagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgcagcggg 116
               |||||| ||||||||||| || || ||||||||||| |||||||||| |||||||| |||
Sbjct: 5603685 gagtaggacacgatttacaataacctgtttgaagacgtatgcatcacggattgcagtggg 5603626

                                                   
Query: 117     cgattgtcgtgatggtgttctcttctattcttatca 152
                ||||| || ||||||||||||||||||||||||||
Sbjct: 5603625 tgattgccgcgatggtgttctcttctattcttatca 5603590



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                           
Query: 155     agaatcttaggaagttggaacttgtttatgctgatcctgctcaacgattggtgggtgatg 214
               ||||||||||||||||||||||  | ||| |||||||||| |||||  | ||||||||||
Sbjct: 5603489 agaatcttaggaagttggaactgatctattctgatcctgcccaacggctagtgggtgatg 5603430

                                                                          
Query: 215     ttgtcctcttagactgtgaaactgctgttgtgtcagatcgatgtggtagcatatctgta 273
               ||| ||| ||   |||||||||||||||||| ||||||||| | || ||||||||||||
Sbjct: 5603429 ttgcccttttgagctgtgaaactgctgttgtatcagatcgacgagggagcatatctgta 5603371



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                           
Query: 301     gaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaaatagctatg 360
               ||||||||||| |||||| |||| || || ||||||||||  ||||| |||| |||||||
Sbjct: 5602930 gaaagtccagagaagaacctagcggtgcattgttcattttacatgggtgaaacagctatg 5602871

                            
Query: 361     agcatccagaagg 373
               |||||||||||||
Sbjct: 5602870 agcatccagaagg 5602858



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                           
Query: 375     tgcatttaagtatcggctatcaattggtgatgagacagacccagtgttggaatcagctta 434
               |||||||||| || ||||  |||||| ||||  |||||| ||||||||||| || |  ||
Sbjct: 5601194 tgcatttaagcattggcttccaattgatgatttgacagaaccagtgttggagtcggtata 5601135

                                                                        
Query: 435     taactgtgttgtggcgagtactttgctggggagtgtttttgttatgattccactcac 491
                |||||||| || || || ||| ||||||||||| | ||||||||||||||||||||
Sbjct: 5601134 caactgtgtcgtcgcaagcactctgctggggagtatctttgttatgattccactcac 5601078



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                       
Query: 619     attctggatggtgacatgctcgtgcaattcttagagctcaccagtgagcaacagca 674
               ||||||||||| |||||||| ||||| ||| | ||||||||||| || ||||||||
Sbjct: 5600359 attctggatggcgacatgcttgtgcagttcctggagctcaccagcgaacaacagca 5600304
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBa0081K20
          Length = 117287

 Score =  167 bits (84), Expect = 6e-38
 Identities = 105/112 (93%)
 Strand = Plus / Minus

                                                                          
Query: 492    cagtgaggagcatcaactgttgcaagatgtccaagaaagactttcacttcacccattgac 551
              |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 113651 cagtgaggagcatcaaatgttgcaagatgtccaagaaagactttcggttcacccattgac 113592

                                                                  
Query: 552    tgctccaatcttgggaaatgaccatgcagagtttcgtcgacgtggtatcccg 603
              ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 113591 tgctccactcttaggaaatgatcatgcagagtttcgtcgccgtggtatcccg 113540



 Score =  111 bits (56), Expect = 3e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                          
Query: 57     gagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgcagcggg 116
              |||||| ||||||||||| || || ||||||||||| |||||||||| |||||||| |||
Sbjct: 116770 gagtaggacacgatttacaataacctgtttgaagacgtatgcatcacggattgcagtggg 116711

                                                  
Query: 117    cgattgtcgtgatggtgttctcttctattcttatca 152
               ||||| || ||||||||||||||||||||||||||
Sbjct: 116710 tgattgccgcgatggtgttctcttctattcttatca 116675



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                          
Query: 155    agaatcttaggaagttggaacttgtttatgctgatcctgctcaacgattggtgggtgatg 214
              ||||||||||||||||||||||  | ||| |||||||||| |||||  | ||||||||||
Sbjct: 116574 agaatcttaggaagttggaactgatctattctgatcctgcccaacggctagtgggtgatg 116515

                                                                         
Query: 215    ttgtcctcttagactgtgaaactgctgttgtgtcagatcgatgtggtagcatatctgta 273
              ||| ||| ||   |||||||||||||||||| ||||||||| | || ||||||||||||
Sbjct: 116514 ttgcccttttgagctgtgaaactgctgttgtatcagatcgacgagggagcatatctgta 116456



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                          
Query: 301    gaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaaatagctatg 360
              ||||||||||| |||||| |||| || || ||||||||||  ||||| |||| |||||||
Sbjct: 116015 gaaagtccagagaagaacctagcggtgcattgttcattttacatgggtgaaacagctatg 115956

                           
Query: 361    agcatccagaagg 373
              |||||||||||||
Sbjct: 115955 agcatccagaagg 115943



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                          
Query: 375    tgcatttaagtatcggctatcaattggtgatgagacagacccagtgttggaatcagctta 434
              |||||||||| || ||||  |||||| ||||  |||||| ||||||||||| || |  ||
Sbjct: 114279 tgcatttaagcattggcttccaattgatgatttgacagaaccagtgttggagtcggtata 114220

                                                                       
Query: 435    taactgtgttgtggcgagtactttgctggggagtgtttttgttatgattccactcac 491
               |||||||| || || || ||| ||||||||||| | ||||||||||||||||||||
Sbjct: 114219 caactgtgtcgtcgcaagcactctgctggggagtatctttgttatgattccactcac 114163



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                      
Query: 619    attctggatggtgacatgctcgtgcaattcttagagctcaccagtgagcaacagca 674
              ||||||||||| |||||||| ||||| ||| | ||||||||||| || ||||||||
Sbjct: 113444 attctggatggcgacatgcttgtgcagttcctggagctcaccagcgaacaacagca 113389
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>dbj|AP004273.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0431A02
          Length = 165038

 Score =  167 bits (84), Expect = 6e-38
 Identities = 105/112 (93%)
 Strand = Plus / Minus

                                                                         
Query: 492   cagtgaggagcatcaactgttgcaagatgtccaagaaagactttcacttcacccattgac 551
             |||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 62258 cagtgaggagcatcaaatgttgcaagatgtccaagaaagactttcggttcacccattgac 62199

                                                                 
Query: 552   tgctccaatcttgggaaatgaccatgcagagtttcgtcgacgtggtatcccg 603
             ||||||| |||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct: 62198 tgctccactcttaggaaatgatcatgcagagtttcgtcgccgtggtatcccg 62147



 Score =  111 bits (56), Expect = 3e-21
 Identities = 86/96 (89%)
 Strand = Plus / Minus

                                                                         
Query: 57    gagtagaacacgatttactattacttgtttgaagacatatgcatcacagattgcagcggg 116
             |||||| ||||||||||| || || ||||||||||| |||||||||| |||||||| |||
Sbjct: 65377 gagtaggacacgatttacaataacctgtttgaagacgtatgcatcacggattgcagtggg 65318

                                                 
Query: 117   cgattgtcgtgatggtgttctcttctattcttatca 152
              ||||| || ||||||||||||||||||||||||||
Sbjct: 65317 tgattgccgcgatggtgttctcttctattcttatca 65282



 Score =  101 bits (51), Expect = 3e-18
 Identities = 102/119 (85%)
 Strand = Plus / Minus

                                                                         
Query: 155   agaatcttaggaagttggaacttgtttatgctgatcctgctcaacgattggtgggtgatg 214
             ||||||||||||||||||||||  | ||| |||||||||| |||||  | ||||||||||
Sbjct: 65181 agaatcttaggaagttggaactgatctattctgatcctgcccaacggctagtgggtgatg 65122

                                                                        
Query: 215   ttgtcctcttagactgtgaaactgctgttgtgtcagatcgatgtggtagcatatctgta 273
             ||| ||| ||   |||||||||||||||||| ||||||||| | || ||||||||||||
Sbjct: 65121 ttgcccttttgagctgtgaaactgctgttgtatcagatcgacgagggagcatatctgta 65063



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 64/73 (87%)
 Strand = Plus / Minus

                                                                         
Query: 301   gaaagtccagaaaagaacttagcagtacaatgttcattttttatgggcgaaatagctatg 360
             ||||||||||| |||||| |||| || || ||||||||||  ||||| |||| |||||||
Sbjct: 64622 gaaagtccagagaagaacctagcggtgcattgttcattttacatgggtgaaacagctatg 64563

                          
Query: 361   agcatccagaagg 373
             |||||||||||||
Sbjct: 64562 agcatccagaagg 64550



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                         
Query: 375   tgcatttaagtatcggctatcaattggtgatgagacagacccagtgttggaatcagctta 434
             |||||||||| || ||||  |||||| ||||  |||||| ||||||||||| || |  ||
Sbjct: 62886 tgcatttaagcattggcttccaattgatgatttgacagaaccagtgttggagtcggtata 62827

                                                                      
Query: 435   taactgtgttgtggcgagtactttgctggggagtgtttttgttatgattccactcac 491
              |||||||| || || || ||| ||||||||||| | ||||||||||||||||||||
Sbjct: 62826 caactgtgtcgtcgcaagcactctgctggggagtatctttgttatgattccactcac 62770



 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                     
Query: 619   attctggatggtgacatgctcgtgcaattcttagagctcaccagtgagcaacagca 674
             ||||||||||| |||||||| ||||| ||| | ||||||||||| || ||||||||
Sbjct: 62051 attctggatggcgacatgcttgtgcagttcctggagctcaccagcgaacaacagca 61996
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>ref|NM_180234.2| Arabidopsis thaliana nucleic acid binding AT3G11960 transcript
            variant AT3G11960.2 mRNA, complete cds
          Length = 4376

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 118  gattgtcgtgatggtgttctcttctattcttatcacgag 156
            ||||| |||||||||||||| || |||||||||||||||
Sbjct: 3244 gattgccgtgatggtgttctattttattcttatcacgag 3282
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>ref|NM_112029.3| Arabidopsis thaliana nucleic acid binding AT3G11960 transcript
            variant AT3G11960.1 mRNA, complete cds
          Length = 4399

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 118  gattgtcgtgatggtgttctcttctattcttatcacgag 156
            ||||| |||||||||||||| || |||||||||||||||
Sbjct: 3462 gattgccgtgatggtgttctattttattcttatcacgag 3500
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>gb|AC016795.6|ATAC016795 Arabidopsis thaliana chromosome III BAC F26K24 genomic sequence,
             complete sequence
          Length = 100835

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 118   gattgtcgtgatggtgttctcttctattcttatcacgag 156
             ||||| |||||||||||||| || |||||||||||||||
Sbjct: 91902 gattgccgtgatggtgttctattttattcttatcacgag 91940
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>gb|BT006164.1| Arabidopsis thaliana clone RAFL19-58-K08 (R50778) unknown protein
            (At3g11960) mRNA, complete cds
          Length = 4399

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                   
Query: 118  gattgtcgtgatggtgttctcttctattcttatcacgag 156
            ||||| |||||||||||||| || |||||||||||||||
Sbjct: 3463 gattgccgtgatggtgttctattttattcttatcacgag 3501
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>emb|BX824377.1|CNS0A7VU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH44ZD07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1642

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 118 gattgtcgtgatggtgttctcttctattcttatcacgag 156
           ||||| |||||||||||||| || |||||||||||||||
Sbjct: 733 gattgccgtgatggtgttctattttattcttatcacgag 771
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>dbj|AP002040.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEC18
          Length = 80099

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                    
Query: 118   gattgtcgtgatggtgttctcttctattcttatcacgag 156
             ||||| |||||||||||||| || |||||||||||||||
Sbjct: 25308 gattgccgtgatggtgttctattttattcttatcacgag 25346
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>emb|AL356579.24| Human DNA sequence from clone RP11-593A16 on chromosome 6 Contains the
             5' end of the gene for KIAA1798 protein and a CpG island,
             complete sequence
          Length = 172816

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   tgaaactgctgttgtgtcaga 251
             |||||||||||||||||||||
Sbjct: 87017 tgaaactgctgttgtgtcaga 86997
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>emb|X72734.1|LEERT15 L.esculentum (ERT 15) ripening-related mRNA
          Length = 1742

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 548 tgactgctccaatcttgggaaatgaccat 576
           |||||||||| || |||||||||||||||
Sbjct: 903 tgactgctcctattttgggaaatgaccat 931
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>gb|AC102417.11| Mus musculus chromosome 3, clone RP24-499J8, complete sequence
          Length = 161101

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 72     tactattacttgtttgaaga 91
              ||||||||||||||||||||
Sbjct: 116755 tactattacttgtttgaaga 116774
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>gb|AC121148.8| Mus musculus chromosome 3, clone RP24-369K4, complete sequence
          Length = 209365

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 72    tactattacttgtttgaaga 91
             ||||||||||||||||||||
Sbjct: 71024 tactattacttgtttgaaga 71043
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>ref|XM_323540.1| Neurospora crassa OR74A hypothetical protein (NCU04201.1) partial
            mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tatctgtattatcctgccct 285
            ||||||||||||||||||||
Sbjct: 1813 tatctgtattatcctgccct 1832
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>ref|XM_956068.1| Neurospora crassa OR74A hypothetical protein (NCU04201.1) partial
            mRNA
          Length = 3264

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 266  tatctgtattatcctgccct 285
            ||||||||||||||||||||
Sbjct: 1813 tatctgtattatcctgccct 1832
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>ref|NM_130869.1| Mus musculus OG2 homeobox gene (Og2x), mRNA
          Length = 1908

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   tttggttttgtgaatgaaaa 29
            ||||||||||||||||||||
Sbjct: 1884 tttggttttgtgaatgaaaa 1903
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>gb|AF527417.1| Homo sapiens cell division cycle 25A (CDC25A) gene, complete cds
          Length = 31868

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 609  agtgccttcaattctggatg 628
            ||||||||||||||||||||
Sbjct: 8382 agtgccttcaattctggatg 8363
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>emb|AL356215.11| Human DNA sequence from clone RP4-607I7 on chromosome 11p11.2-12
             Contains the start of the CD44 (CD44 antigen (homing
             function andnIndian blood group system)) gene, ESTs, STSs,
             GSSs and a CpG island, complete sequence
          Length = 150533

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 458   tgctggggagtgtttttgtt 477
             ||||||||||||||||||||
Sbjct: 16800 tgctggggagtgtttttgtt 16819
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>emb|AL356575.8| Human DNA sequence from clone RP11-340C20 on chromosome 13 Contains
            part of the PCCA gene for propionyl Coenzyme A
            carboxylase alpha polypeptide, and a ribosomal protein
            L15 (RPL15) pseudogene, complete sequence
          Length = 158527

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 5    ctgtatttggttttgtgaatgaaa 28
            ||||||| ||||||||||||||||
Sbjct: 3107 ctgtattaggttttgtgaatgaaa 3084
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>emb|AL139243.11| Human DNA sequence from clone RP11-439D8 on chromosome 10 Contains a
             novel gene, the HPS1 gene for Hermansky-Pudlak syndrome 1,
             the 3' end of the HPSE2 gene for heparanase 2 and a CpG
             island, complete sequence
          Length = 143463

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 469   gtttttgttatgattccact 488
             ||||||||||||||||||||
Sbjct: 96804 gtttttgttatgattccact 96823
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>emb|BX324172.22| Zebrafish DNA sequence from clone DKEYP-86D6 in linkage group 13,
              complete sequence
          Length = 184555

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     tttgaagacatatgcatcac 103
              ||||||||||||||||||||
Sbjct: 143670 tttgaagacatatgcatcac 143651
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>emb|AL807368.1|NC62D11 Neurospora crassa DNA linkage group V cosmid contig 62D11
          Length = 102165

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 266   tatctgtattatcctgccct 285
             ||||||||||||||||||||
Sbjct: 10848 tatctgtattatcctgccct 10867
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>emb|AL807373.1|NC21D9 Neurospora crassa DNA linkage group V cosmid contig 21D9
          Length = 55380

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  tatctgtattatcctgccct 285
            ||||||||||||||||||||
Sbjct: 8555 tatctgtattatcctgccct 8536
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>emb|CR847800.4| Zebrafish DNA sequence from clone DKEY-182M5 in linkage group 14,
              complete sequence
          Length = 187193

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tttgaagacatatgcatcac 103
              ||||||||||||||||||||
Sbjct: 113012 tttgaagacatatgcatcac 113031
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>emb|BX530062.10| Zebrafish DNA sequence from clone DKEY-13M1 in linkage group 11,
             complete sequence
          Length = 144678

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tttgaagacatatgcatcac 103
             ||||||||||||||||||||
Sbjct: 88803 tttgaagacatatgcatcac 88822
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>emb|BX537303.10| Zebrafish DNA sequence from clone DKEYP-73E12, complete sequence
          Length = 204522

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tttgaagacatatgcatcac 103
             ||||||||||||||||||||
Sbjct: 16590 tttgaagacatatgcatcac 16571
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>gb|AE012430.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 338 of
             460 of the complete genome
          Length = 12468

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   gctgatcctgctcaacgatt 203
             ||||||||||||||||||||
Sbjct: 10892 gctgatcctgctcaacgatt 10911
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>gb|AC006836.7| Arabidopsis thaliana chromosome 2 clone F19B11 map RNSI, complete
             sequence
          Length = 87543

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 665   agcaacagcaaactgntattgat 687
             ||||||||||||||| |||||||
Sbjct: 54022 agcaacagcaaactgatattgat 54044
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>gb|AY355359.1| Rickettsia akari strain ATCC VR-148T surface antigen (sca1) gene,
            complete cds
          Length = 4616

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 5    ctgtatttggttttgtgaatgaaa 28
            ||||||||||||| ||||||||||
Sbjct: 2295 ctgtatttggtttagtgaatgaaa 2272
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>gb|AY061761.1| Mus musculus newborn ovary homeodomain protein (Nobox) mRNA, complete
            cds
          Length = 1908

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 10   tttggttttgtgaatgaaaa 29
            ||||||||||||||||||||
Sbjct: 1884 tttggttttgtgaatgaaaa 1903
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>gb|AC018929.12| Oryza sativa chromosome 10 BAC OSJNBa0027L23 genomic sequence, complete
             sequence
          Length = 143961

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 282   ccctggactggaagtttctg 301
             ||||||||||||||||||||
Sbjct: 69039 ccctggactggaagtttctg 69020
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 184     gctgatcctgctcaacgatt 203
               ||||||||||||||||||||
Sbjct: 1226241 gctgatcctgctcaacgatt 1226222
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>gb|AC008945.6|AC008945 Homo sapiens chromosome 5 clone CTD-2325A15, complete sequence
          Length = 193254

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 322   gcagtacaatgttcattttt 341
             ||||||||||||||||||||
Sbjct: 63430 gcagtacaatgttcattttt 63449
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 282      ccctggactggaagtttctg 301
                ||||||||||||||||||||
Sbjct: 22417016 ccctggactggaagtttctg 22416997
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 346     ggcgaaatagctatgagcat 365
               ||||||||||||||||||||
Sbjct: 5270737 ggcgaaatagctatgagcat 5270718
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>gb|AC124916.3| Homo sapiens chromosome 3 clone RP11-1029M24, complete sequence
          Length = 207596

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    agtgccttcaattctggatg 628
              ||||||||||||||||||||
Sbjct: 205434 agtgccttcaattctggatg 205453
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>gb|AC072053.4| Homo sapiens BAC clone RP11-21A5 from 2, complete sequence
          Length = 39225

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 73    actattacttgtttgaagac 92
             ||||||||||||||||||||
Sbjct: 21054 actattacttgtttgaagac 21073
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>gb|AC104190.3| Homo sapiens chromosome 3 clone RP11-502L5, complete sequence
          Length = 171181

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 609   agtgccttcaattctggatg 628
             ||||||||||||||||||||
Sbjct: 69687 agtgccttcaattctggatg 69706
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>dbj|AP005652.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0015B15
          Length = 123083

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 346   ggcgaaatagctatgagcat 365
             ||||||||||||||||||||
Sbjct: 12249 ggcgaaatagctatgagcat 12230
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>dbj|AP004991.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:OSJNBa0016O19
          Length = 169120

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 346    ggcgaaatagctatgagcat 365
              ||||||||||||||||||||
Sbjct: 137459 ggcgaaatagctatgagcat 137440
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>emb|AL929322.6| Zebrafish DNA sequence from clone DKEY-10H23, complete sequence
          Length = 220527

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tttgaagacatatgcatcac 103
              ||||||||||||||||||||
Sbjct: 141772 tttgaagacatatgcatcac 141791
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>emb|X73475.1|BYVMBPA Beet yellows virus (isolate German BYV-G) genes for putative
            membrane-binding protein, heat shock 70-related protein,
            coat protein homolog and coat protein
          Length = 5980

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 293  aagtttctgaaagtccagaaaaga 316
            |||||||||| |||||||||||||
Sbjct: 4581 aagtttctgagagtccagaaaaga 4558
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 282      ccctggactggaagtttctg 301
                ||||||||||||||||||||
Sbjct: 22429084 ccctggactggaagtttctg 22429065
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>emb|CR847961.12| Zebrafish DNA sequence from clone DKEY-154B7 in linkage group 5,
             complete sequence
          Length = 237051

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tttgaagacatatgcatcac 103
             ||||||||||||||||||||
Sbjct: 88495 tttgaagacatatgcatcac 88476
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>gb|AC149586.6| Mus musculus BAC clone RP24-510C9 from 12, complete sequence
          Length = 198641

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 328    caatgttcattttttatggg 347
              ||||||||||||||||||||
Sbjct: 102663 caatgttcattttttatggg 102682
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>gb|M59452.1|BYVVCPG Beet yellows virus coat protein gene, complete cds, and two ORFs
          Length = 2724

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 293  aagtttctgaaagtccagaaaaga 316
            |||||||||| |||||||||||||
Sbjct: 2270 aagtttctgagagtccagaaaaga 2247
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>dbj|AB034802.1| Pisum sativum OSCPSY mRNA for beta-amyrin synthase, complete cds
          Length = 2601

 Score = 40.1 bits (20), Expect = 9.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 568  aatgaccatgcagagtttcg 587
            ||||||||||||||||||||
Sbjct: 1290 aatgaccatgcagagtttcg 1309


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,677,892
Number of Sequences: 3902068
Number of extensions: 6677892
Number of successful extensions: 127309
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127067
Number of HSP's gapped (non-prelim): 242
length of query: 705
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 682
effective length of database: 17,143,297,704
effective search space: 11691729034128
effective search space used: 11691729034128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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