ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bah23i11 |
|---|---|
| Clone Library Name | barley_pub |
>RSE1_SCHPO (Q9UTT2) Pre-mRNA-splicing factor rse1 (Pre-mRNA processing protein| 12) (Spliceosome associated protein 130) Length = 1206 Score = 55.5 bits (132), Expect = 2e-07 Identities = 58/234 (24%), Positives = 89/234 (38%), Gaps = 18/234 (7%) Frame = +1 Query: 28 NPHRMKKYAVSRTRFTITCLKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLV 207 N ++K +S IT + AS+I D + V F Y L D R Sbjct: 964 NKKMLRKGELSAVPLFITHITVQASRIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWT 1023 Query: 208 GDVVLLDCETAVVSDRCGSISVLSCPGLEVSESPEKN------------------LAVQC 333 VL+D +T D+ G+I +L CP + E+N L + Sbjct: 1024 TTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMA 1083 Query: 334 SFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNCVVASTLLGSVFVMIPLTSEEHQLL 513 FF +I S+QK ++E A ++ + LLG+V V P ++E Sbjct: 1084 HFFTNDIPTSLQKV-------------QLVEGAREVLLWTGLLGTVGVFTPFINQEDVRF 1130 Query: 514 QDVQERLSLHPLTAPILGNDHAEFRRRGIPSGVPSILDGDMLVQFLELTSEQQQ 675 E L L P+ G DH +R P V ++DGD+ + L Q+ Sbjct: 1131 FQQLEFL-LRKECPPLAGRDHLAYRSYYAP--VKCVIDGDLCEMYYSLPHPVQE 1181
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 54.3 bits (129), Expect = 4e-07 Identities = 53/218 (24%), Positives = 90/218 (41%), Gaps = 19/218 (8%) Frame = +1 Query: 76 ITCLKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDR 255 + L S+I GD ++ ++F SY +L D + V +LD +T +D+ Sbjct: 993 VVSLDAQGSRIVVGDMQESIIFASYKPLENRLVTFADDVMPKFVTRCTMLDYDTVAAADK 1052 Query: 256 CGSISVLSCPG---LEVSESP-------EK--------NLAVQCSFFMGEIAMSIQKAAF 381 G+I VL G V E P EK ++ FF+G+I S+ + A Sbjct: 1053 FGNIYVLRLDGNTSRSVDEDPTGMTIVHEKPVLMGAAHKASLVAHFFVGDIITSLHRTA- 1111 Query: 382 KYRLSIGDETDPVLESAYNCVVASTLLGSVFVMIPLTSEEH-QLLQDVQERLSLHPLTAP 558 ++ ++ + L GS+ ++P S+E L ++ L Sbjct: 1112 ------------MVAGGREVLLYTGLSGSIGALVPFVSKEDVDTLSTLESHLRQE--NNS 1157 Query: 559 ILGNDHAEFRRRGIPSGVPSILDGDMLVQFLELTSEQQ 672 I+G DH +R P V S++DGD+ F L+ +Q Sbjct: 1158 IVGRDHLAYRSSYAP--VKSVIDGDLCETFGLLSPAKQ 1193
>RSE1_YARLI (Q6CAH5) Pre-mRNA-splicing factor RSE1| Length = 1143 Score = 51.6 bits (122), Expect = 2e-06 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 10/210 (4%) Frame = +1 Query: 76 ITCLKTYA--SQIAAGDCRDGVLFYSYHENLRKLELVY---ADPAQRLVGDVVLLDCETA 240 +TCL +A +++A GD R V E ++Y D R V + +D ET Sbjct: 919 VTCLAHFAGSNRVAVGDIRQSVTVCVVLEE-DSGHVIYPLVCDKISRQVTCLFFVDYETV 977 Query: 241 VVSDRCGSISVLSCPGLEVSESPEKNLAVQCSFFMGEIAMSIQKAA---FKYRLSIGDET 411 + DR G ++L P + E + AV + ++ ++ A F + S E Sbjct: 978 ALGDRFGGFTMLRIPSEASKLADEDHNAVH----LRQLEPTLNGPAHFRFDHVASFHIED 1033 Query: 412 DPVLESAYN-CVVASTLLGSVFVMIPLTSEEHQLLQDVQERLSLHPLTAP-ILGNDHAEF 585 PV YN +V LLG+V +P+ S + +D++ + P ++G DH F Sbjct: 1034 VPVAIHMYNDYLVVCGLLGTVSAFVPVVSPKQS--RDLKTIEKFVCASDPGLMGRDHGRF 1091 Query: 586 RRRGIPSGVPSILDGDMLVQFLELTSEQQQ 675 R +P V ++DGDML + L + ++++ Sbjct: 1092 RGYYVP--VKEVVDGDMLREVLVMDEKRRE 1119
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 49.3 bits (116), Expect = 1e-05 Identities = 49/212 (23%), Positives = 92/212 (43%), Gaps = 12/212 (5%) Frame = +1 Query: 76 ITCLKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQ-RLVGDVVLLDCETAVVSD 252 + + ++I GD ++ + Y + L++AD +Q R + V +D ET D Sbjct: 989 VVTINVQGARIIVGDMQESTFYCVYRSIPTRQLLIFADDSQPRWITCVTSVDYETVACGD 1048 Query: 253 RCGSISVLSC-PGL--EVSESPE-KNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETD-- 414 + G+I + P + +V + P + + SF MG + K +IG Sbjct: 1049 KFGNIFINRLDPSISEKVDDDPTGATILHEKSFLMG----AAHKTEMIGHYNIGSVVTSI 1104 Query: 415 ---PVLESAYNCVVASTLLGSVFVMIPLTSEEHQLLQDVQERLSLHPLTAPI--LGNDHA 579 P++ + +V +T+ G+V ++P S + + L +H T I +G DH Sbjct: 1105 TKIPLVAGGRDVLVYTTISGAVGALVPFVSSDD---IEFMSTLEMHMRTQDISLVGRDHI 1161 Query: 580 EFRRRGIPSGVPSILDGDMLVQFLELTSEQQQ 675 +R +P + ++DGD+ F L +QQ Sbjct: 1162 AYRGYYVP--IKGVVDGDLCESFSLLPYPKQQ 1191
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 42.4 bits (98), Expect = 0.001 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 10/217 (4%) Frame = +1 Query: 85 LKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDRCGS 264 LKT I GD VL +Y E + D + V +LD + + ++ + Sbjct: 914 LKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFN 973 Query: 265 ISVLSCPGLEVSESPEKNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNCV 444 + V ++ ++L F +GE + + ++G+ + P S V Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQGS----V 1028 Query: 445 VASTLLGSVFVMIPLTSEEHQLLQDVQERL-----SLHPLTAPILGNDHAEFRRRGIPSG 609 + T+ G + ++ L+ + LL D+Q RL S+ + + H E R+ P+ Sbjct: 1029 LFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPA- 1085 Query: 610 VPSILDGDMLVQFLELTSEQQQTXI-----DDGSSVK 705 +DGD++ FL+++ + Q + DDGS +K Sbjct: 1086 -TGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMK 1121
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 42.4 bits (98), Expect = 0.001 Identities = 48/217 (22%), Positives = 91/217 (41%), Gaps = 10/217 (4%) Frame = +1 Query: 85 LKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDRCGS 264 LKT I GD VL +Y E + D + V +LD + + ++ + Sbjct: 914 LKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFN 973 Query: 265 ISVLSCPGLEVSESPEKNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNCV 444 + V ++ ++L F +GE + + ++G+ + P S V Sbjct: 974 LFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQ-NLGETSTPTQGS----V 1028 Query: 445 VASTLLGSVFVMIPLTSEEHQLLQDVQERL-----SLHPLTAPILGNDHAEFRRRGIPSG 609 + T+ G + ++ L+ + LL D+Q RL S+ + + H E R+ P+ Sbjct: 1029 LFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTE--RKTEPA- 1085 Query: 610 VPSILDGDMLVQFLELTSEQQQTXI-----DDGSSVK 705 +DGD++ FL+++ + Q + DDGS +K Sbjct: 1086 -TGFIDGDLIESFLDISRPKMQEVVANLQYDDGSGMK 1121
>RSE1_CANAL (Q5A7S5) Pre-mRNA-splicing factor RSE1| Length = 1219 Score = 38.9 bits (89), Expect = 0.015 Identities = 42/183 (22%), Positives = 83/183 (45%), Gaps = 6/183 (3%) Frame = +1 Query: 124 RDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDRCGSISVLSCPGLEVSE 303 + ++F + E+ + D +R + ++ LD +T + D+ G+I V ++S+ Sbjct: 1010 KSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDE-DISK 1068 Query: 304 SPEKNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNC-----VVASTLLGS 468 + + + G + K IGD N V+ + L G+ Sbjct: 1069 QADDDWTI-LKTQDGILNSCPYKLQNLIEFHIGDIITSFNLGCLNLAGTESVIYTGLQGT 1127 Query: 469 VFVMIPLTSE-EHQLLQDVQERLSLHPLTAPILGNDHAEFRRRGIPSGVPSILDGDMLVQ 645 + ++IPL S+ E +LL ++Q L + ++G DH + R P + +++DGD+L + Sbjct: 1128 IGLLIPLVSKSEVELLFNLQ--LYMQQSQNNLVGKDHLKLRSYYNP--IKNVIDGDLLER 1183 Query: 646 FLE 654 FLE Sbjct: 1184 FLE 1186
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 34.7 bits (78), Expect = 0.29 Identities = 42/210 (20%), Positives = 80/210 (38%), Gaps = 3/210 (1%) Frame = +1 Query: 85 LKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDRCGS 264 ++T IA GD + Y +E D + V +L+ + + +D C + Sbjct: 873 VQTRGDFIAVGDLMKSISLLIYKHEEGAIEERARDYNANWMTAVEILNDDIYLGTDNCFN 932 Query: 265 ISVLSCPGLEVSESPEKNLAVQCSFFMGEIAMSIQKAAFKYRLSIGDETDPVLESAYNCV 444 I + ++ + V + +GE + + +L D V Sbjct: 933 IFTVKKNNEGATDEERARMEVVGEYHIGEFVNRFRHGSLVMKLPDSDI------GQIPTV 986 Query: 445 VASTLLGSVFVMIPLTSEEHQLLQDVQERLSLHPLTAPILGNDHAEFR---RRGIPSGVP 615 + T+ G + V+ L E++ L+ +Q SL + + G H ++R + Sbjct: 987 IFGTVSGMIGVIASLPQEQYAFLEKLQT--SLRKVIKGVGGLSHEQWRSFNNEKRTAEAK 1044 Query: 616 SILDGDMLVQFLELTSEQQQTXIDDGSSVK 705 LDGD++ FL+L S + I G V+ Sbjct: 1045 GYLDGDLIESFLDL-SRGKMEEISKGMDVQ 1073
>YNR6_YEAST (P53882) Hypothetical 67.4 kDa protein in RPS3-PSD1 intergenic| region Length = 636 Score = 32.7 bits (73), Expect = 1.1 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Frame = -2 Query: 539 SESLSWTSCNS*CSSLVSGIITKTLPSKVLATTQL*ADSNTGSVSSPIDSRYLNAAFWML 360 S S SW+S +S S LVS ++ +L S + T+L + + S+ SP ++ ++ L Sbjct: 156 SLSSSWSSLSSPSSLLVSSSLSLSLSSS-YSDTKLFSFDSRSSIFSPSTPTVISPSYTYL 214 Query: 359 IAISPIK-----NEHCTAKFFSGLSETSSPGQDNTDMLPHRSDTTAVSQSKRTTSPTN 201 +IS ++ +FS +S S+ +T P S T+ S + S TN Sbjct: 215 SSISATSFQISTTSELSSSWFSTISSPSTISNKDT-TCPSSSRNTSTSFYSSSLSSTN 271
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 32.7 bits (73), Expect = 1.1 Identities = 22/86 (25%), Positives = 32/86 (37%) Frame = -3 Query: 259 HIDLTQQQFHSLRGQHHPPIVEQDQHKQVPTS*DSRDKNRREHHHDNRPLQSVMHMSSNK 80 H QQQ H + QHH Q QH+Q + + ++ HH + Q H + Sbjct: 168 HHQQMQQQQHHQQMQHHQLQQHQHQHQQ-----QQQQQQHQQQHHQQQQQQQQQHHQQQQ 222 Query: 79 ***IVFYSRHISSYDEDFHSQNQIQK 2 H S + H NQ Q+ Sbjct: 223 --------HHQHSQPQQQHQHNQQQQ 240
>VIAA_SALTY (Q8ZKW3) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL DVQER++L P L ND+A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSDVQERMTLSGQLEPTLAENDNAAGRLWDMSAGQLKRGDYQLIVKYGEFLA 207 Query: 664 EQQQ 675 Q + Sbjct: 208 AQPE 211
>VIAA_SALTI (Q8Z2R0) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL DVQER++L P L ND+A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSDVQERMTLSGQLEPTLAENDNAAGRLWDMSAGQLKRGDYQLIVKYGEFLA 207 Query: 664 EQQQ 675 Q + Sbjct: 208 AQPE 211
>VIAA_SALPA (Q5PJX9) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL DVQER++L P L ND+A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSDVQERMTLSGQLEPTLAENDNAAGRLWDMSAGQLKRGDYQLIVKYGEFLA 207 Query: 664 EQQQ 675 Q + Sbjct: 208 AQPE 211
>VIAA_SALCH (Q57HW5) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.3 bits (72), Expect = 1.4 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL DVQER++L P L ND+A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSDVQERMTLSGQLEPTLAENDNAAGRLWDMSTGQLKRGDYQLIVKYGEFLA 207 Query: 664 EQQQ 675 Q + Sbjct: 208 AQPE 211
>VIAA_SHISS (Q3YVP9) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>VIAA_ECOLI (P0ADN0) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>VIAA_ECOL6 (Q8FBS6) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>VIAA_ECO57 (P0ADN1) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 32.0 bits (71), Expect = 1.9 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ A R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQLIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>VIAA_SHIFL (Q83IY2) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 31.2 bits (69), Expect = 3.2 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ A R + +G D +V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTAAGRLWDMSAGQLKRGDYQFIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>ILVC_BUCUN (Q9AQ99) Ketol-acid reductoisomerase (EC 1.1.1.86)| (Acetohydroxy-acid isomeroreductase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (Fragment) Length = 345 Score = 31.2 bits (69), Expect = 3.2 Identities = 26/97 (26%), Positives = 44/97 (45%), Gaps = 6/97 (6%) Frame = +1 Query: 208 GDVVLLDCETAVVSDRCGSISVLSCPGLEVSESPEKN------LAVQCSFFMGEIAMSIQ 369 G+++ D +V+ +C PG EV E ++ +AV + +I + I Sbjct: 73 GEIIRKDITVIMVAPKC--------PGTEVREEYKRGFGVPTLIAVHNENDIRQIGLDIA 124 Query: 370 KAAFKYRLSIGDETDPVLESAYNCVVASTLLGSVFVM 480 KA + SIG VLES++ V S L+G ++ Sbjct: 125 KA---WSFSIGSHRAGVLESSFIAEVKSDLMGEQTIL 158
>SRP_DROME (P52172) Box A-binding factor (ABF) (GATA-binding factor-B)| (Transcription factor GATA-B) (dGATA-B) (Protein serpent) Length = 1264 Score = 30.4 bits (67), Expect = 5.5 Identities = 16/52 (30%), Positives = 23/52 (44%) Frame = -3 Query: 259 HIDLTQQQFHSLRGQHHPPIVEQDQHKQVPTS*DSRDKNRREHHHDNRPLQS 104 H L QQQ H + HH Q Q +Q+ + + ++ HHH N S Sbjct: 403 HEQLHQQQHHHQQQLHH----HQQQQQQLYHQQQQQQQQQQHHHHHNNSTSS 450
>VIAA_SHIDS (Q329T4) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 483 Score = 30.4 bits (67), Expect = 5.5 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPILG-NDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL +VQER++L PIL N+ R + +G D ++V++ E + Sbjct: 148 LEEEREQLLSEVQERMTLSGQLEPILADNNTGAGRLWDMSAGQLKRGDYQLIVKYGEFLN 207 Query: 664 EQQQ 675 EQ + Sbjct: 208 EQPE 211
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 30.0 bits (66), Expect = 7.2 Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 3/81 (3%) Frame = +1 Query: 442 VVASTLLGSVFVMIPLTSEEHQLLQDVQERLSLHPLTAPILGNDHAEFR---RRGIPSGV 612 V+ T+ G + V+ L E++ L+ +Q SL + + G H ++R + Sbjct: 986 VIFGTVNGVIGVIASLPQEQYTFLEKLQS--SLRKVIKGVGGLSHEQWRSFNNEKRTAEA 1043 Query: 613 PSILDGDMLVQFLELTSEQQQ 675 + LDGD++ FL+L+ + + Sbjct: 1044 RNFLDGDLIESFLDLSRNKME 1064
>Y540_MYCPU (Q98RF5) Hypothetical UPF0011 protein MYPU_0540| Length = 222 Score = 30.0 bits (66), Expect = 7.2 Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 1/103 (0%) Frame = +1 Query: 76 ITCLKTYASQIAAGDCRDGVLFYSYHENLRKLELVYADPAQRLVGDVVLLDCETAVVSDR 255 I C T S+I + +SYH+ K +L Y + ++V + A++SD Sbjct: 31 IACEDTRVSKILLNHYQINKPLFSYHKFNEKSKLNY-------IFELVESGSDVALISD- 82 Query: 256 CGSISVLSCPG-LEVSESPEKNLAVQCSFFMGEIAMSIQKAAF 381 + V+S PG L + E+ +KN+ ++ + +M+ K++F Sbjct: 83 -SGMPVISDPGFLLIREAKKKNIDLEVIPGVSAFSMAFVKSSF 124
>LRC57_XENLA (Q6INV3) Leucine-rich repeat-containing protein 57| Length = 238 Score = 30.0 bits (66), Expect = 7.2 Identities = 12/32 (37%), Positives = 21/32 (65%) Frame = -1 Query: 222 EDNITHQSLSRISINKFQLPKILVIRIEENTI 127 E N+ +S+IS+N P++ V+R+EEN + Sbjct: 156 ELNLNQNQISQISVNISHCPRLKVLRLEENCL 187
>AT10D_MACFA (Q9GKS6) Probable phospholipid-transporting ATPase VD (EC 3.6.3.1)| (Fragment) Length = 653 Score = 29.6 bits (65), Expect = 9.4 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 2/103 (1%) Frame = +1 Query: 361 SIQKAAFKYRLSIGDETDPVLESAYNCVVASTLLGSVFVMIPLTSEEHQLLQDVQERLSL 540 ++ KA K + GD+ + + AY C++ ST+L L + L + V + L Sbjct: 192 ALHKAGIKIWMLTGDKQETAVNIAYACMLMSTILKE------LQKKTQALPEQVSLSVDL 245 Query: 541 HPLTAPILGNDHAEFRRRGIPSG--VPSILDGDMLVQFLELTS 663 H P + R I +G + L + QFLELTS Sbjct: 246 HQPPVP----QDSGLRAGLIITGKTLEFALQESLQKQFLELTS 284
>3HAO_MOUSE (Q78JT3) 3-hydroxyanthranilate 3,4-dioxygenase (EC 1.13.11.6)| (3-HAO) (3-hydroxyanthranilic acid dioxygenase) (3-hydroxyanthranilate oxygenase) Length = 286 Score = 29.6 bits (65), Expect = 9.4 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -3 Query: 262 YHIDLTQQQFHSLRGQHHPPIVEQDQHKQVP 170 YHI+ ++ F+ L G ++EQ QH+ VP Sbjct: 46 YHIEEGEEVFYQLEGDMILRVLEQGQHRDVP 76
>VIAA_YERPS (Q66GH7) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 488 Score = 29.6 bits (65), Expect = 9.4 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPIL-GNDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL ++Q RL+L PIL ND+A R + G D +L+Q+ + Sbjct: 153 LEQEREQLLAELQRRLALSGALEPILTTNDNAAGRLWDMSQGHLQRGDYQLLLQYGDFLQ 212 Query: 664 EQQQ 675 +Q + Sbjct: 213 QQPE 216
>VIAA_YERPE (Q8ZJT2) Protein viaA (VWA-domain protein interacting with AAA| ATPase) Length = 488 Score = 29.6 bits (65), Expect = 9.4 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%) Frame = +1 Query: 487 LTSEEHQLLQDVQERLSLHPLTAPIL-GNDHAEFRRRGIPSGVPSILDGDMLVQFLELTS 663 L E QLL ++Q RL+L PIL ND+A R + G D +L+Q+ + Sbjct: 153 LEQEREQLLAELQRRLALSGALEPILTTNDNAAGRLWDMSQGHLQRGDYQLLLQYGDFLQ 212 Query: 664 EQQQ 675 +Q + Sbjct: 213 QQPE 216
>SLIK5_HUMAN (O94991) SLIT and NTRK-like protein 5 precursor (Leucine-rich| repeat-containing protein 11) Length = 958 Score = 29.6 bits (65), Expect = 9.4 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = -3 Query: 262 YHIDLTQQQFHSLRGQHHPPIVEQDQHKQVPTS*DSR--DKNRREHHHDNRPLQSV 101 + + +T H L+ Q PP Q +Q P + ++ RRE HH P SV Sbjct: 780 HELKVTYSSNHHLQQQQQPPPPPQQPQQQPPPQLQLQPGEEERRESHHLRSPAYSV 835 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,014,189 Number of Sequences: 219361 Number of extensions: 2067368 Number of successful extensions: 6127 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 5889 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6115 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7082949625 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
