>IF3X_CAEEL (P34466) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1247

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 12/167 (7%)
 Frame = +1

Query: 145 GDYFEIEVKVCNGKLLHIVASAKGFYLVGKPH------------TVSRSLVDLLQQLSSG 288
           GD   I++     ++ H+    +GFY+                 TV +S+++LLQ +S G
Sbjct: 228 GDVLYIDITTVENRIYHVTCCTRGFYVNNSQDGRFDPTVSNSNKTVYQSVIELLQNVSPG 287

Query: 289 FANAYEALMKAFVDHNKFGNLPFGFRANTWLVPPVYVDSATKSPALPAEDENWXXXXXXX 468
           F   Y  ++K   +      LP  +  ++W+  P+  D    S +L A  E         
Sbjct: 288 FKKVYPQILKRRQEKTLVERLPTSYPVSSWVGNPLKTD-GYMSDSLRA-IELTEPFRVGF 345

Query: 469 XXXXXXXXXXWAREFSILARMPSKTEEERVIRDRKAFLLHNLFVDTA 609
                     W  E      M  K+  ERVIRDR  + +H  +V+ A
Sbjct: 346 EDHMPGLLRDWNEELQTTFEMTRKSISERVIRDRSYYKIHADYVNAA 392

>IF3X_DICDI (O15818) Putative eukaryotic translation initiation factor 3|
           subunit (eIF-3)
          Length = 1321

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 11/174 (6%)
 Frame = +1

Query: 145 GDYFEIEVKVCNGKLLHIVASAKGFYL-----------VGKPHTVSRSLVDLLQQLSSGF 291
           GD F +++ +  G  + + AS +GF++           V    T++ SL  LL Q+S  F
Sbjct: 287 GDLFYLDITLLEGTTICVTASTQGFFINQSSNATFNPSVSPKATINHSLHQLLTQVSRLF 346

Query: 292 ANAYEALMKAFVDHNKFGNLPFGFRANTWLVPPVYVDSATKSPALPAEDENWXXXXXXXX 471
                 ++     ++ F  LP     + W+       S T    +   ++          
Sbjct: 347 RRGLNQILTNIGRNHPFDMLPGVLPVHNWVA-----SSKTNRYDI---NKGTDTFVSVQD 398

Query: 472 XXXXXXXXXWAREFSILARMPSKTEEERVIRDRKAFLLHNLFVDTAIFRAASTI 633
                    W  E      +P  T +ER+IRDR    +++ FV+ AI R A  I
Sbjct: 399 VELRGNPRDWNEEIQAPKELPKSTVQERIIRDRAISKVNSEFVECAI-RGAQVI 451

>STAB1_HUMAN (Q9NY15) Stabilin-1 precursor (FEEL-1 protein) (MS-1 antigen)|
          Length = 2570

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
 Frame = +1

Query: 25   MVAIGPPPKLGEFYDFFSFAHLTPPLHFIRRKERNGAAQDGDYFEIEVKVCNGKLLHIVA 204
            +V++G    L E +D + F      +  +  + RNG   DG      +  CNGKLL ++A
Sbjct: 2282 IVSLGARKNLSERWDAYCFR-----VQDVACRCRNGFVGDG------ISTCNGKLLDVLA 2330

Query: 205  SAKGF-----YLVGKPHTVSRSLVDLLQQLSS--GFANAYEALMKAFVDH 333
            +   F      L+G  +   R L D L  L     +   +  + + FVD+
Sbjct: 2331 ATANFSTFYGMLLGYANATQRGL-DFLDFLDDELTYKTLFVPVNEGFVDN 2379

>GUNB_CELFI (P26225) Endoglucanase B precursor (EC 3.2.1.4)|
           (Endo-1,4-beta-glucanase B) (Cellulase B)
          Length = 1045

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 15/27 (55%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +3

Query: 198 SCFGQGILPGGQAAHRKPV---LGGPA 269
           SC GQ I PGGQ+ HR+ +   L GPA
Sbjct: 577 SCVGQDIHPGGQSQHRREIQFRLTGPA 603

>LAMC2_HORSE (Q8HZI9) Laminin gamma-2 chain precursor (Laminin 5 gamma 2|
           subunit)
          Length = 1190

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -1

Query: 379 AMCLHESRMADSQTCCDPQKLSSVPRTHWQIHC*AAVAGPPRTGLRCAACPPG 221
           A C  + R+ DS+  CDP  +S  P    +  C  AV     TG RC  C PG
Sbjct: 126 AGCAQDQRLLDSKCDCDPAGISG-PCDSGRCVCKPAV-----TGERCDRCRPG 172

>NOT1_YEAST (P25655) General negative regulator of transcription subunit 1|
          Length = 2108

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 7/86 (8%)
 Frame = +1

Query: 211 KGFYLVGKPHTVSRSLVDLLQQLSSGFANAYEALMKAFVDHNKFGNLPFGFRANTWLVPP 390
           + F+L   P T+  +L DLL  L     N   AL+ + +      NL       +WL PP
Sbjct: 170 RNFFLQTTPETLESNLRDLLHSLEGESLNDLLALLLSEILSPGSQNLQ-NDPTRSWLTPP 228

Query: 391 VYVDSATKS-------PALPAEDENW 447
           + +D+  +         +L A   NW
Sbjct: 229 MVLDATNRGNVIARSISSLQANQINW 254

>VL1_HPV22 (P50788) Major capsid protein L1|
          Length = 510

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = +1

Query: 25  MVAIGPPPKLGEFYDFF-------SFAHLTPPLHFIRRKERNGAAQDGDYFEIEVKVCNG 183
           M  IG  P LGE++D         S   L PPL       +NG  +DGD F+I     N 
Sbjct: 156 MFIIGCIPCLGEYWDKAPVCEDAGSQVGLCPPLEL-----KNGVIEDGDMFDIGFGNINN 210

Query: 184 KLL 192
           K L
Sbjct: 211 KTL 213

>OPSV_CHICK (P28684) Violet-sensitive opsin (Violet cone photoreceptor pigment)|
           (Violet cone opsin)
          Length = 347

 Score = 30.4 bits (67), Expect = 4.8
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
 Frame = +1

Query: 199 VASAKGFYLVGKPHTVSRSLVDLLQQLSSGFANAYEALMKAFVDHNKFGNLPFGFR---- 366
           VASA+G+++ GK      + V     L +G++ A+ A  +  V    FGN  F  R    
Sbjct: 91  VASARGYFVFGKRVCELEAFVGTHGGLVTGWSLAFLAFERYIVICKPFGNFRFSSRHALL 150

Query: 367 --ANTWLV 384
               TWL+
Sbjct: 151 VVVATWLI 158

>PAM17_USTMA (Q4P983) Presequence translocated-associated motor subunit PAM17,|
           mitochondrial precursor
          Length = 232

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -2

Query: 528 SSQNRKFSCPASPVMFSVSSAATSIPTPVLI--LSGQSWALRSRIHIYRRNKPCVCT 364
           SS NR    P SP++FS SS+++S  +P     LS  SW    ++   RR    V T
Sbjct: 44  SSSNRGTFSPTSPILFSASSSSSSSSSPSSSRELSHLSWDKYLQLRRSRRLAGMVTT 100

>KR101_HUMAN (P60331) Keratin-associated protein 10-1 (Keratin-associated|
           protein 10.1) (High sulfur keratin-associated protein
           10.1) (Keratin-associated protein 18-1)
           (Keratin-associated protein 18.1)
          Length = 282

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/61 (29%), Positives = 27/61 (44%)
 Frame = -1

Query: 346 SQTCCDPQKLSSVPRTHWQIHC*AAVAGPPRTGLRCAACPPGRIPWPKQLCAEASRCKPS 167
           S  C D  ++ + P +  + HC A     P   L     P  R+  P   C +A+ C+PS
Sbjct: 10  SSACSDSWQVDACPESCCEPHCCALSCCAPAPCLTLVCTPVSRVSSP---CCQAA-CEPS 65

Query: 166 P 164
           P
Sbjct: 66  P 66

>YAD6_YEAST (P39729) Hypothetical 40.7 kDa protein in PYK1-SNC1 intergenic|
           region
          Length = 369

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
 Frame = -2

Query: 456 IPTPVLILSGQSWALRSRIHIY--RRNKPCVCTKAEWQIPKLV--VIHKSFHQCLVR--I 295
           IP  V I SGQ W L   + +   R N   + TK + QIP     V+ +S  +C V+   
Sbjct: 266 IPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRS-DRCSVKDFC 324

Query: 294 GKSTAELL*QVHQGPAYGVRLAHQVESLGRSNYVQKLPVANL 169
            +    L+        YG  + HQ + +G S+ ++   V  +
Sbjct: 325 NQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTI 366

>AIRE_HUMAN (O43918) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein) (APECED
           protein)
          Length = 545

 Score = 29.6 bits (65), Expect = 8.1
 Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
 Frame = -1

Query: 298 HWQIHC*AAVAGPPRTGLRCAACPPGRIPWPKQ--LCAEASRCKPSP 164
           HW+ H  A  + P  TGLRC +C     P P +  L    +R  P P
Sbjct: 454 HWRCHFPAGTSRPG-TGLRCRSCSGDVTPAPVEGVLAPSPARLAPGP 499


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,689,480
Number of Sequences: 219361
Number of extensions: 2048719
Number of successful extensions: 5965
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 5682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5964
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6143359464
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)