>ARO1_PNECA (Q12659) Pentafunctional AROM polypeptide [Includes:|
           3-dehydroquinate synthase (EC 4.2.3.4); 3-dehydroquinate
           dehydratase (EC 4.2.1.10) (3-dehydroquinase); Shikimate
           dehydrogenase (EC 1.1.1.25); Shikimate kinase (EC
           2.7.1.71); 3-phosphoshikima
          Length = 1581

 Score = 33.9 bits (76), Expect = 0.48
 Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +1

Query: 208 HIVTFTFYCIIIPTTIFVPEVHIPKWGCVYIPTIITLLNSVGTPRSFH--LLFFWILFEN 381
           HI    F CI  PT + + + +I     +YIP+  T   S+   RS +  LLFF I    
Sbjct: 24  HITNELFTCIFSPTYVIITDSNIE---TLYIPSFKTYFISMAKQRSINSRLLFFTIPPGE 80

Query: 382 VMSLHRTKATLIGLLEAGRANEWVVTEK 465
                +TKA +          +W+++EK
Sbjct: 81  KSKSRKTKALI---------EDWLLSEK 99

>NU5M_SORFM (Q953I4) NADH-ubiquinone oxidoreductase chain 5 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 5)
          Length = 606

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 25/98 (25%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
 Frame = +1

Query: 100 NLFRKMLLEIVTNKKVTIWKKFHVIYNFFLVRKIVAHIVTFTFYCIIIPTTIFVPEVH-- 273
           NLF   L+  ++   + +      IY        V  I+++ F+  +IPT IF+   H  
Sbjct: 2   NLFTSTLILSLSMLTIPVLMSLSSIYKSTQYPYYVKTIISYAFFTSLIPTLIFINSGHEA 61

Query: 274 -IPKWGCVYIPTIITLLNSVGTPRSFHLLFFWILFENV 384
            +  W  + I T+   LN       F L +F ++F  V
Sbjct: 62  ILSNWHWMTIQTVKLSLN-------FKLDYFSMIFTPV 92

>ITIH2_PIG (O02668) Inter-alpha-trypsin inhibitor heavy chain H2 precursor (ITI|
            heavy chain H2) (Inter-alpha-inhibitor heavy chain 2)
          Length = 935

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +1

Query: 22   VQVKSELPSTFKAFRFQQHRWSCGPANLFRKMLLEIVTNKKVTIWKKFHVIYNFFLVRKI 201
            V++ +E  S  +  R     WS     L +++ + +   K VT+     V ++  L R  
Sbjct: 762  VEISTETISLSRGSRVSVLSWSDSALVLNQRVHISVKKEKTVTVTLDQEVSFSVLLHRVW 821

Query: 202  VAHIVTFTFYCIII-PTTIFVPEVH 273
              H +   F  I I PTT F P+ H
Sbjct: 822  KKHPINVDFLGIYIPPTTKFSPKAH 846

>DEFA_ANTMA (P23706) Floral homeotic protein DEFICIENS|
          Length = 227

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 126 DCDKQESDNLEEIPCHLQLLLGAQDRRPHCDIXXXXXXXXXXXXCP*GSYTKVGLRLHSN 305
           D  K++  N+EEI  +L L   A+   PH  +             P G    + LRL +N
Sbjct: 148 DTSKKKVRNVEEIHRNLVLEFDARREDPHFGLVDNEGDYNSVLGFPNGGPRIIALRLPTN 207

Query: 306 HH 311
           HH
Sbjct: 208 HH 209

>TRUA_DEIRA (Q9RS37) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine|
           isomerase I) (tRNA pseudouridylate synthase I)
          Length = 280

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 241 IPTTIFVPEVHIPKWGCVYIPTIITLLNSVGTPRSFHLLF 360
           +PTT  VP V +P+    ++P  +++L++   P  FH  F
Sbjct: 81  VPTTFRVPLVQLPRALNAWLPASVSVLSAEVAPAGFHARF 120

>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit|
           (Voltage-gated calcium channel alpha subunit Cav2.2)
           (Calcium channel, L type, alpha-1 polypeptide isoform 5)
           (Brain calcium channel III) (BIII)
          Length = 2339

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 14/62 (22%), Positives = 30/62 (48%)
 Frame = +1

Query: 88  CGPANLFRKMLLEIVTNKKVTIWKKFHVIYNFFLVRKIVAHIVTFTFYCIIIPTTIFVPE 267
           C P + F +  L+    +  + +++   ++ FF+ R + A    +T  C++   T+ V  
Sbjct: 443 CAPGSPFARASLKSGKTESSSYFRRKEKMFRFFIRRMVKAQSFYWTVLCVVALNTLCVAM 502

Query: 268 VH 273
           VH
Sbjct: 503 VH 504

>OSBL3_HUMAN (Q9H4L5) Oxysterol-binding protein-related protein 3 (OSBP-related|
           protein 3) (ORP-3)
          Length = 887

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = -2

Query: 569 APTPSSGTFNLSHILMNDFLADALLADFIFMALPSFSVTTHSFALPAS-NKPINVALVLC 393
           AP PSS   +L +IL N+   D                     A+P   N+P+N    LC
Sbjct: 518 APCPSSSNISLWNILRNNIGKDL-----------------SKVAMPVELNEPLNTLQRLC 560

Query: 392 SDMTFSKRIQKKSKWKDLGVPTELRRVMMV 303
            ++ +S+ + K ++     +P+ L R++ V
Sbjct: 561 EELEYSELLDKAAQ-----IPSPLERMVYV 585

>BPAEB_HUMAN (Q8WXK8) Bullous pemphigoid antigen 1, isoform 7 (Bullous pemphigoid|
            antigen) (BPA) (Hemidesmosomal plaque protein) (Dystonia
            musculorum protein) (Dystonin) (Fragment)
          Length = 3060

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 18/78 (23%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -2

Query: 518  DFLADALLADFIFMALPSFSVTTHSFALPASNKPINVALV----LCSDMTFSKRIQKKSK 351
            D LA +++ + + + +    ++T S  +PA+ + + +       L S   FSK +++++ 
Sbjct: 1320 DALAQSMITESMAIKVLEILLSTGSLVIPATGEQLTLQKAFQQNLVSSALFSKVLERQNM 1379

Query: 350  WKDLGVPTELRRVMMVGM 297
             KDL  P    +V ++ M
Sbjct: 1380 CKDLIDPCTSEKVSLIDM 1397

>YQEF_BACSU (P54451) Hypothetical lipoprotein yqeF precursor|
          Length = 243

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +1

Query: 559 GVGAFLFSCGWYDVAFGKDNFFIYLFFQSMAFFVVGGWLRWHN 687
           G+   L +C       GK + F Y  +Q+ AF   GG  +WHN
Sbjct: 131 GIKPILMTCIPIIEGNGKHHLFYYSRYQAAAFEPKGGARKWHN 173

>ARBK2_RAT (P26819) Beta-adrenergic receptor kinase 2 (EC 2.7.11.15)|
           (Beta-ARK-2) (G-protein-coupled receptor kinase 3)
          Length = 688

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 207 GDDLAHQEEVVDDMEFLPDCHFLVCHNLQQHLPEQVC 97
           G+ LA  E ++  +    DC F+VC     H P+++C
Sbjct: 232 GETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC 268

>ARBK2_HUMAN (P35626) Beta-adrenergic receptor kinase 2 (EC 2.7.11.15)|
           (Beta-ARK-2) (G-protein-coupled receptor kinase 3)
          Length = 688

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 207 GDDLAHQEEVVDDMEFLPDCHFLVCHNLQQHLPEQVC 97
           G+ LA  E ++  +    DC F+VC     H P+++C
Sbjct: 232 GETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC 268

>ARBK2_BOVIN (P26818) Beta-adrenergic receptor kinase 2 (EC 2.7.11.15)|
           (Beta-ARK-2) (G-protein-coupled receptor kinase 3)
          Length = 688

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 207 GDDLAHQEEVVDDMEFLPDCHFLVCHNLQQHLPEQVC 97
           G+ LA  E ++  +    DC F+VC     H P+++C
Sbjct: 232 GETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLC 268

>OR33B_DROME (P81915) Odorant receptor 33b|
          Length = 379

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +1

Query: 97  ANLFRKMLLEIVTNKKVTIWKKFHVIYNFFLVRKI 201
           +N F   LL++V    VTIW   H+I   F+ R +
Sbjct: 28  SNFFLNRLLDLVITIFVTIWYPIHLILGLFMERSL 62

>MYST4_HUMAN (Q8WYB5) Histone acetyltransferase MYST4 (EC 2.3.1.48) (EC 2.3.1.-)|
            (MYST protein 4) (MOZ, YBF2/SAS3, SAS2 and TIP60 protein
            4) (Histone acetyltransferase MOZ2) (Monocytic leukemia
            zinc finger protein-related factor) (Histone
            acetyltransferas
          Length = 2073

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
 Frame = -1

Query: 375  EEDPEEKQVERPGSSNRIEEGDDGWNVDATPLWYMNLRDKDGCRDDYAVEGECHNVGDDL 196
            EE+ EE++ E        EE + G NV+         +D DG +     E E     +D 
Sbjct: 1352 EEEEEEEEEEEEEEEEEGEEEEGGGNVE---------KDPDGAKSQEKEEPEISTEKEDS 1402

Query: 195  A----HQEEVVDDME 163
            A    H+EE  +D E
Sbjct: 1403 ARLDDHEEEEEEDEE 1417


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,555,994
Number of Sequences: 219361
Number of extensions: 2232572
Number of successful extensions: 6597
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 6275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6587
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)