ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bags8j13
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_450167.1| Oryza sativa (japonica cultivar-group), mRNA 442 e-121
2ref|XM_450166.1| Oryza sativa (japonica cultivar-group), mRNA 442 e-121
3dbj|AK074022.1| Oryza sativa (japonica cultivar-group) cDNA clon... 442 e-121
4dbj|AK065095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 442 e-121
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
6dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
7dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic D... 129 9e-27
8gb|AF329273.1|AF329273 Arabidopsis thaliana trithorax-like prote... 82 2e-12
9ref|NM_179839.1| Arabidopsis thaliana DNA binding / nucleic acid... 74 5e-10
10gb|BT002941.1| Arabidopsis thaliana clone RAFL15-02-L12 (R20230)... 74 5e-10
11emb|BX842472.1|CNS0A9SD Arabidopsis thaliana Full-length cDNA Co... 60 7e-06
12ref|NM_100464.3| Arabidopsis thaliana DNA binding / nucleic acid... 58 3e-05
13gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map ... 44 0.42
14gb|AC005350.1| Homo sapiens chromosome 5, BAC clone 261j17 (LBNL... 42 1.7
15gb|AC127587.4| Mus musculus BAC clone RP24-143O1 from chromosome... 42 1.7
16emb|AL162579.16| Human DNA sequence from clone RP11-421P21 on ch... 42 1.7
17emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on ch... 42 1.7
18gb|AC122706.3| Homo sapiens chromosome 5 clone RP11-114I23, comp... 42 1.7
19gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Canc... 42 1.7
20gb|AC006257.1|AC006257 Homo sapiens, clone hRPK.11_A_1, complete... 42 1.7
21gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 6.6
22gb|AC133156.7| Mus musculus chromosome 15, clone RP24-291M22, co... 40 6.6
23gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosom... 40 6.6
24ref|NM_181277.1| Mus musculus procollagen, type XIV, alpha 1 (Co... 40 6.6
25emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 i... 40 6.6
26gb|AY221110.1| Mus musculus collagen type XIV (Col14a1) mRNA, co... 40 6.6
27ref|XM_949347.1| Theileria annulata strain Ankara 26S proteasome... 40 6.6
28gb|AF039720.1| Caenorhabditis elegans cosmid F33D11, complete se... 40 6.6
29gb|AE014075.1| Escherichia coli CFT073, complete genome 40 6.6
30gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete se... 40 6.6
31gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete ... 40 6.6
32gb|AC158946.4| Mus musculus chromosome 1, clone RP24-267F8, comp... 40 6.6
33gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, com... 40 6.6
34gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, co... 40 6.6
35dbj|AK125777.1| Homo sapiens cDNA FLJ43789 fis, clone TESTI2053242 40 6.6
36dbj|AK136987.1| Mus musculus 12 days embryo embryonic body betwe... 40 6.6
37gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, comp... 40 6.6
38gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence 40 6.6
39dbj|AK009906.1| Mus musculus adult male tongue cDNA, RIKEN full-... 40 6.6
40dbj|AK043358.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 6.6
41gb|AF266093.1|AF266093 Chalcolestes viridis large subunit riboso... 40 6.6
42gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-58... 40 6.6
43gb|AC151472.2| Mus musculus BAC clone RP23-407N2 from chromosome... 40 6.6
44gb|AC007880.2| Homo sapiens BAC clone RP11-323F11 from 2, comple... 40 6.6
45gb|AC010729.8| Homo sapiens BAC clone RP11-350H23 from 2, comple... 40 6.6
46gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone m... 40 6.6
47emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on ch... 40 6.6
48gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 ma... 40 6.6
49emb|BX465210.7| Zebrafish DNA sequence from clone CH211-266A5 in... 40 6.6
50emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, ... 40 6.6
51gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, c... 40 6.6
52dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 6.6
53gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromo... 40 6.6
54gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone ... 40 6.6
55gb|AC119249.7| Mus musculus chromosome 7, clone RP24-274B19, com... 40 6.6
56emb|AL606536.13| Mouse DNA sequence from clone RP23-93C9 on chro... 40 6.6
57emb|AJ131395.1|MMU131395 Mus musculus mRNA for collagen type XIV... 40 6.6
58dbj|AP002761.3| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 6.6 
>ref|XM_450167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2944

 Score =  442 bits (223), Expect = e-121
 Identities = 380/431 (88%), Gaps = 1/431 (0%)
 Strand = Plus / Plus

                                                                        
Query: 57   atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
            ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 1743 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 1802

                                                                        
Query: 117  ttattcaggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaa 176
            ||||||||||||| |||||||||||||| || || || ||||||||||||| ||| || |
Sbjct: 1803 ttattcaggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagaca 1862

                                                                        
Query: 177  ccctccgtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgttt 236
            || | ||||| || |||||||||||||| |||||||||||||| |||| ||| |||||||
Sbjct: 1863 cctttcgtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgttt 1922

                                                                        
Query: 237  gtgatatggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatga 296
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 1923 gtgatatggatgaggaatacgaagacaatttgttcttgcaatgtgataagtgccgtatga 1982

                                                                        
Query: 297  tggtgcatgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgca 356
            |||| |||||| | |||||||| || || ||||||||||||||||| |||||| | ||||
Sbjct: 1983 tggtacatgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgca 2042

                                                                        
Query: 357  acctgtgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacag 416
            ||||||| ||||||| ||| ||||| || || |||||||||||||| ||||| || ||||
Sbjct: 2043 acctgtgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacag 2102

                                                                        
Query: 417  ggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataatgg 476
            |||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct: 2103 ggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-atgg 2161

                       
Query: 477  attcctgaaac 487
            |||||||||||
Sbjct: 2162 attcctgaaac 2172
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>ref|XM_450166.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3570

 Score =  442 bits (223), Expect = e-121
 Identities = 380/431 (88%), Gaps = 1/431 (0%)
 Strand = Plus / Plus

                                                                        
Query: 57   atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
            ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 1714 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 1773

                                                                        
Query: 117  ttattcaggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaa 176
            ||||||||||||| |||||||||||||| || || || ||||||||||||| ||| || |
Sbjct: 1774 ttattcaggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagaca 1833

                                                                        
Query: 177  ccctccgtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgttt 236
            || | ||||| || |||||||||||||| |||||||||||||| |||| ||| |||||||
Sbjct: 1834 cctttcgtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgttt 1893

                                                                        
Query: 237  gtgatatggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatga 296
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 1894 gtgatatggatgaggaatacgaagacaatttgttcttgcaatgtgataagtgccgtatga 1953

                                                                        
Query: 297  tggtgcatgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgca 356
            |||| |||||| | |||||||| || || ||||||||||||||||| |||||| | ||||
Sbjct: 1954 tggtacatgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgca 2013

                                                                        
Query: 357  acctgtgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacag 416
            ||||||| ||||||| ||| ||||| || || |||||||||||||| ||||| || ||||
Sbjct: 2014 acctgtgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacag 2073

                                                                        
Query: 417  ggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataatgg 476
            |||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct: 2074 ggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-atgg 2132

                       
Query: 477  attcctgaaac 487
            |||||||||||
Sbjct: 2133 attcctgaaac 2143
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>dbj|AK074022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074A15, full
            insert sequence
          Length = 3570

 Score =  442 bits (223), Expect = e-121
 Identities = 380/431 (88%), Gaps = 1/431 (0%)
 Strand = Plus / Plus

                                                                        
Query: 57   atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
            ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 1714 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 1773

                                                                        
Query: 117  ttattcaggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaa 176
            ||||||||||||| |||||||||||||| || || || ||||||||||||| ||| || |
Sbjct: 1774 ttattcaggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagaca 1833

                                                                        
Query: 177  ccctccgtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgttt 236
            || | ||||| || |||||||||||||| |||||||||||||| |||| ||| |||||||
Sbjct: 1834 cctttcgtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgttt 1893

                                                                        
Query: 237  gtgatatggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatga 296
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 1894 gtgatatggatgaggaatacgaagacaatttgttcttgcaatgtgataagtgccgtatga 1953

                                                                        
Query: 297  tggtgcatgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgca 356
            |||| |||||| | |||||||| || || ||||||||||||||||| |||||| | ||||
Sbjct: 1954 tggtacatgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgca 2013

                                                                        
Query: 357  acctgtgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacag 416
            ||||||| ||||||| ||| ||||| || || |||||||||||||| ||||| || ||||
Sbjct: 2014 acctgtgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacag 2073

                                                                        
Query: 417  ggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataatgg 476
            |||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct: 2074 ggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-atgg 2132

                       
Query: 477  attcctgaaac 487
            |||||||||||
Sbjct: 2133 attcctgaaac 2143
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>dbj|AK065095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M12, full
            insert sequence
          Length = 2944

 Score =  442 bits (223), Expect = e-121
 Identities = 380/431 (88%), Gaps = 1/431 (0%)
 Strand = Plus / Plus

                                                                        
Query: 57   atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
            ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 1743 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 1802

                                                                        
Query: 117  ttattcaggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaa 176
            ||||||||||||| |||||||||||||| || || || ||||||||||||| ||| || |
Sbjct: 1803 ttattcaggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagaca 1862

                                                                        
Query: 177  ccctccgtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgttt 236
            || | ||||| || |||||||||||||| |||||||||||||| |||| ||| |||||||
Sbjct: 1863 cctttcgtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgttt 1922

                                                                        
Query: 237  gtgatatggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatga 296
            |||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 1923 gtgatatggatgaggaatacgaagacaatttgttcttgcaatgtgataagtgccgtatga 1982

                                                                        
Query: 297  tggtgcatgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgca 356
            |||| |||||| | |||||||| || || ||||||||||||||||| |||||| | ||||
Sbjct: 1983 tggtacatgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgca 2042

                                                                        
Query: 357  acctgtgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacag 416
            ||||||| ||||||| ||| ||||| || || |||||||||||||| ||||| || ||||
Sbjct: 2043 acctgtgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacag 2102

                                                                        
Query: 417  ggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataatgg 476
            |||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||||
Sbjct: 2103 ggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-atgg 2161

                       
Query: 477  attcctgaaac 487
            |||||||||||
Sbjct: 2162 attcctgaaac 2172
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                           
Query: 123     aggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaaccctcc 182
               ||||||| |||||||||||||| || || || ||||||||||||| ||| || ||| | |
Sbjct: 2556489 aggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagacacctttc 2556430

                                                                           
Query: 183     gtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgtttgtgata 242
               |||| || |||||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct: 2556429 gtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgtttgtgata 2556370

                        
Query: 243     tggatgagg 251
               |||||||||
Sbjct: 2556369 tggatgagg 2556361



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                           
Query: 302     catgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgcaacctg 361
               |||||| | |||||||| || || ||||||||||||||||| |||||| | |||||||||
Sbjct: 2556143 catgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgcaacctg 2556084

                                                                       
Query: 362     tgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacagg 417
               || ||||||| ||| ||||| || || |||||||||||||| ||||| || |||||
Sbjct: 2556083 tgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacagg 2556028



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                           
Query: 415     agggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataat 474
               |||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||
Sbjct: 2555961 agggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-at 2555903

                        
Query: 475     ggattcctg 483
               |||||||||
Sbjct: 2555902 ggattcctg 2555894



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                           
Query: 257     gaagacaatttgttcttgcaatgtgacaagtgccgtatgatggt 300
               |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2556266 gaagacaatttgttcttgcaatgtgataagtgccgtatgatggt 2556223



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                           
Query: 57      atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
               ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 2557027 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 2556968

                        
Query: 117     ttattcagg 125
               |||||||||
Sbjct: 2556967 ttattcagg 2556959
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>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0406E03
          Length = 201069

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                          
Query: 123    aggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaaccctcc 182
              ||||||| |||||||||||||| || || || ||||||||||||| ||| || ||| | |
Sbjct: 143079 aggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagacacctttc 143020

                                                                          
Query: 183    gtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgtttgtgata 242
              |||| || |||||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct: 143019 gtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgtttgtgata 142960

                       
Query: 243    tggatgagg 251
              |||||||||
Sbjct: 142959 tggatgagg 142951



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                          
Query: 302    catgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgcaacctg 361
              |||||| | |||||||| || || ||||||||||||||||| |||||| | |||||||||
Sbjct: 142733 catgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgcaacctg 142674

                                                                      
Query: 362    tgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacagg 417
              || ||||||| ||| ||||| || || |||||||||||||| ||||| || |||||
Sbjct: 142673 tgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacagg 142618



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                          
Query: 415    agggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataat 474
              |||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||
Sbjct: 142551 agggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-at 142493

                       
Query: 475    ggattcctg 483
              |||||||||
Sbjct: 142492 ggattcctg 142484



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                          
Query: 257    gaagacaatttgttcttgcaatgtgacaagtgccgtatgatggt 300
              |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 142856 gaagacaatttgttcttgcaatgtgataagtgccgtatgatggt 142813



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                          
Query: 57     atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
              ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 143617 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 143558

                       
Query: 117    ttattcagg 125
              |||||||||
Sbjct: 143557 ttattcagg 143549
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>dbj|AP005582.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
            clone:P0006E02
          Length = 141782

 Score =  129 bits (65), Expect = 9e-27
 Identities = 113/129 (87%)
 Strand = Plus / Minus

                                                                        
Query: 123  aggagttgcccaatgcaaggtcgtgtttgaaatattttgaaaatggtggggaaaccctcc 182
            ||||||| |||||||||||||| || || || ||||||||||||| ||| || ||| | |
Sbjct: 1767 aggagttacccaatgcaaggtcatgcttaaagtattttgaaaatgctggagacacctttc 1708

                                                                        
Query: 183  gtggttacagagctgttcatgttaattggaaagatctggacttttgcagtgtttgtgata 242
            |||| || |||||||||||||| |||||||||||||| |||| ||| |||||||||||||
Sbjct: 1707 gtgggtatagagctgttcatgtaaattggaaagatctagactattgtagtgtttgtgata 1648

                     
Query: 243  tggatgagg 251
            |||||||||
Sbjct: 1647 tggatgagg 1639



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 99/116 (85%)
 Strand = Plus / Minus

                                                                        
Query: 302  catgctcggtgctatggcgagctagaaccattgaatggagtactttggttatgcaacctg 361
            |||||| | |||||||| || || ||||||||||||||||| |||||| | |||||||||
Sbjct: 1421 catgctagatgctatggtgaactcgaaccattgaatggagtcctttggctttgcaacctg 1362

                                                                    
Query: 362  tgccgacctggggcacctcgcgtgtccccacgatgctgtctatgtcctgtcacagg 417
            || ||||||| ||| ||||| || || |||||||||||||| ||||| || |||||
Sbjct: 1361 tgtcgacctgaggcgcctcgtgtttctccacgatgctgtctttgtccagtaacagg 1306



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 63/69 (91%), Gaps = 1/69 (1%)
 Strand = Plus / Minus

                                                                        
Query: 415  agggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgcaataat 474
            |||||| ||||||||||| ||||||||||| |||||||||||||| |||||||| || ||
Sbjct: 1239 agggggcgcaatgaaaccaacaacagatggtcgttgggctcatcttgcatgtgctat-at 1181

                     
Query: 475  ggattcctg 483
            |||||||||
Sbjct: 1180 ggattcctg 1172



 Score = 79.8 bits (40), Expect = 8e-12
 Identities = 43/44 (97%)
 Strand = Plus / Minus

                                                        
Query: 257  gaagacaatttgttcttgcaatgtgacaagtgccgtatgatggt 300
            |||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1544 gaagacaatttgttcttgcaatgtgataagtgccgtatgatggt 1501



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 61/69 (88%)
 Strand = Plus / Minus

                                                                        
Query: 57   atgtttgtcagagatctggttccgacatgtttggtttttcaaacccacaaattaggcagc 116
            ||||||||||| ||||||||||| | |||||||| |||||||| ||||||||  |||| |
Sbjct: 2305 atgtttgtcagggatctggttcctatatgtttggcttttcaaatccacaaatacggcaac 2246

                     
Query: 117  ttattcagg 125
            |||||||||
Sbjct: 2245 ttattcagg 2237
to top
>gb|AF329273.1|AF329273 Arabidopsis thaliana trithorax-like protein 1 (TRX1) mRNA, complete
            cds
          Length = 3189

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Plus

                                                                        
Query: 242  atggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatgatggtg 301
            |||||||||||||||||  ||||||||||| |||||||||| || ||  | |||||||| 
Sbjct: 1849 atggatgaggagtatgagaacaatttgttcctgcaatgtgataaatgtagaatgatggtc 1908

                                         
Query: 302  catgctcggtgctatggcgagctagaacc 330
            ||||||  ||||||||| |||||||||||
Sbjct: 1909 catgctaagtgctatggagagctagaacc 1937



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 59/71 (83%)
 Strand = Plus / Plus

                                                                        
Query: 398  tgtctatgtcctgtcacagggggtgcaatgaaacctacaacagatggccgttgggctcat 457
            ||||| ||||||||   ||||||||| ||||| || ||||| ||||| || |||||||||
Sbjct: 2005 tgtctttgtcctgtagtagggggtgctatgaagccgacaactgatggtcgctgggctcat 2064

                       
Query: 458  ctagcatgtgc 468
            || || |||||
Sbjct: 2065 ctggcttgtgc 2075
to top
>ref|NM_179839.1| Arabidopsis thaliana DNA binding / nucleic acid binding / protein
            binding / zinc ion binding AT2G31650 mRNA, complete cds
          Length = 3276

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                        
Query: 242  atggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatgatggtg 301
            |||||||||||||||||  ||||||||||| |||||||||| || ||  | |||||||| 
Sbjct: 1849 atggatgaggagtatgagaacaatttgttcctgcaatgtgataaatgtagaatgatggtc 1908

                                         
Query: 302  catgctcggtgctatggcgagctagaacc 330
            ||||||   |||||||| |||||||||||
Sbjct: 1909 catgctaaatgctatggagagctagaacc 1937



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                        
Query: 389  ccacgatgctgtctatgtcctgtcacagggggtgcaatgaaacctacaacagatggccgt 448
            ||||| || ||||| ||||||||   ||||||||| ||||| || ||||| ||||| || 
Sbjct: 1996 ccacggtgttgtctttgtcctgtagtagggggtgctatgaagccgacaactgatggtcgc 2055

                                
Query: 449  tgggctcatctagcatgtgc 468
            ||||||||||| || |||||
Sbjct: 2056 tgggctcatctggcttgtgc 2075
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>gb|BT002941.1| Arabidopsis thaliana clone RAFL15-02-L12 (R20230) putative
           trithorax protein 1 (At2g31650) mRNA, complete cds
          Length = 1726

 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 76/89 (85%)
 Strand = Plus / Plus

                                                                       
Query: 242 atggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatgatggtg 301
           |||||||||||||||||  ||||||||||| |||||||||| || ||  | |||||||| 
Sbjct: 283 atggatgaggagtatgagaacaatttgttcctgcaatgtgataaatgtagaatgatggtc 342

                                        
Query: 302 catgctcggtgctatggcgagctagaacc 330
           ||||||   |||||||| |||||||||||
Sbjct: 343 catgctaaatgctatggagagctagaacc 371



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 389 ccacgatgctgtctatgtcctgtcacagggggtgcaatgaaacctacaacagatggccgt 448
           ||||| || ||||| ||||||||   ||||||||| ||||| || ||||| ||||| || 
Sbjct: 430 ccacggtgttgtctttgtcctgtagtagggggtgctatgaagccgacaactgatggtcgc 489

                               
Query: 449 tgggctcatctagcatgtgc 468
           ||||||||||| || |||||
Sbjct: 490 tgggctcatctggcttgtgc 509
to top
>emb|BX842472.1|CNS0A9SD Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB4ZD02 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1430

 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 69/82 (84%)
 Strand = Plus / Plus

                                                                       
Query: 249 aggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatgatggtgcatgctc 308
           ||||||||||  ||||||||||| |||||||||| || ||  | |||||||| |||||| 
Sbjct: 58  aggagtatgagaacaatttgttcctgcaatgtgataaatgtagaatgatggtccatgcta 117

                                 
Query: 309 ggtgctatggcgagctagaacc 330
             |||||||| |||||||||||
Sbjct: 118 aatgctatggagagctagaacc 139



 Score = 48.1 bits (24), Expect = 0.027
 Identities = 66/80 (82%)
 Strand = Plus / Plus

                                                                       
Query: 389 ccacgatgctgtctatgtcctgtcacagggggtgcaatgaaacctacaacagatggccgt 448
           ||||| || ||||| ||||||||   ||||||||| ||||| || ||||| ||||| || 
Sbjct: 198 ccacggtgttgtctttgtcctgtagtagggggtgctatgaagccgacaactgatggtcgc 257

                               
Query: 449 tgggctcatctagcatgtgc 468
           ||||||||||| || |||||
Sbjct: 258 tgggctcatctggcttgtgc 277
to top
>ref|NM_100464.3| Arabidopsis thaliana DNA binding / nucleic acid binding / protein
            binding / zinc ion binding AT1G05830 mRNA, complete cds
          Length = 3726

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 74/89 (83%)
 Strand = Plus / Plus

                                                                        
Query: 242  atggatgaggagtatgaagacaatttgttcttgcaatgtgacaagtgccgtatgatggtg 301
            ||||||||||| |||||  ||||||||||| |||||||||| || ||  | |||||||| 
Sbjct: 2003 atggatgaggaatatgagaacaatttgttcctgcaatgtgataaatgtagaatgatggtc 2062

                                         
Query: 302  catgctcggtgctatggcgagctagaacc 330
            ||| || | ||||||||| |||| |||||
Sbjct: 2063 catactagatgctatggccagctggaacc 2091



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 63/77 (81%)
 Strand = Plus / Plus

                                                                        
Query: 392  cgatgctgtctatgtcctgtcacagggggtgcaatgaaacctacaacagatggccgttgg 451
            ||||| ||||| ||||||||   |||||| || ||||| || ||||| ||||| || |||
Sbjct: 2153 cgatgttgtctttgtcctgtagtagggggcgctatgaagccgacaactgatgggcgctgg 2212

                             
Query: 452  gctcatctagcatgtgc 468
            |||||||| || |||||
Sbjct: 2213 gctcatctggcttgtgc 2229
to top
>gb|AC007071.7| Arabidopsis thaliana chromosome 2 clone T9H9 map nga361, complete
             sequence
          Length = 79734

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                               
Query: 249   aggagtatgaagacaatttgttcttgcaatgtga 282
             ||||||||||  ||||||||||| ||||||||||
Sbjct: 47095 aggagtatgagaacaatttgttcctgcaatgtga 47062



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 46/54 (85%)
 Strand = Plus / Minus

                                                                   
Query: 415   agggggtgcaatgaaacctacaacagatggccgttgggctcatctagcatgtgc 468
             ||||||||| ||||| || ||||| ||||| || ||||||||||| || |||||
Sbjct: 46734 agggggtgctatgaagccgacaactgatggtcgctgggctcatctggcttgtgc 46681
to top
>gb|AC005350.1| Homo sapiens chromosome 5, BAC clone 261j17 (LBNL H190), complete
             sequence
          Length = 78661

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 146   tgtttgaaatattttgaaaat 166
             |||||||||||||||||||||
Sbjct: 62834 tgtttgaaatattttgaaaat 62814
to top
>gb|AC127587.4| Mus musculus BAC clone RP24-143O1 from chromosome 7, complete sequence
          Length = 139419

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   tgtttgaaatattttgaaaat 166
             |||||||||||||||||||||
Sbjct: 52453 tgtttgaaatattttgaaaat 52473
to top
>emb|AL162579.16| Human DNA sequence from clone RP11-421P21 on chromosome 6 Contains the
             5' end of the PRIM2A gene for primase polypeptide 2A
             (58kD) and a CpG island, complete sequence
          Length = 64186

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 205   taattggaaagatctggactt 225
             |||||||||||||||||||||
Sbjct: 48724 taattggaaagatctggactt 48744
to top
>emb|AL603702.14| Mouse DNA sequence from clone RP23-406A14 on chromosome 11 Contains a
              protease (prosome, macropain) 26S subunit ATPase 1 (Psmc1)
              pseudogene and a CpG island, complete sequence
          Length = 197265

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 75     gttccgacatgtttggttttt 95
              |||||||||||||||||||||
Sbjct: 132639 gttccgacatgtttggttttt 132659
to top
>gb|AC122706.3| Homo sapiens chromosome 5 clone RP11-114I23, complete sequence
          Length = 118762

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   tgtttgaaatattttgaaaat 166
             |||||||||||||||||||||
Sbjct: 37610 tgtttgaaatattttgaaaat 37630
to top
>gb|AC153986.8| Mus musculus 6 BAC RP24-105F24 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 162415

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 76    ttccgacatgtttggtttttc 96
             |||||||||||||||||||||
Sbjct: 60321 ttccgacatgtttggtttttc 60301
to top
>gb|AC006257.1|AC006257 Homo sapiens, clone hRPK.11_A_1, complete sequence
          Length = 175818

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 205    taattggaaagatctggactt 225
              |||||||||||||||||||||
Sbjct: 145989 taattggaaagatctggactt 145969
to top
>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 453    ctcatctagcatgtgcaata 472
              ||||||||||||||||||||
Sbjct: 187722 ctcatctagcatgtgcaata 187741
to top
>gb|AC133156.7| Mus musculus chromosome 15, clone RP24-291M22, complete sequence
          Length = 151577

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 37     tgcatcggaactggaaggaa 56
              ||||||||||||||||||||
Sbjct: 140326 tgcatcggaactggaaggaa 140307
to top
>gb|AC134569.4| Mus musculus BAC clone RP24-240H21 from chromosome 16, complete sequence
          Length = 168794

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 248    gaggagtatgaagacaattt 267
              ||||||||||||||||||||
Sbjct: 116555 gaggagtatgaagacaattt 116574
to top
>ref|NM_181277.1| Mus musculus procollagen, type XIV, alpha 1 (Col14a1), mRNA
          Length = 6456

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tgcatcggaactggaaggaa 56
            ||||||||||||||||||||
Sbjct: 6303 tgcatcggaactggaaggaa 6284
to top
>emb|CR788303.14| Zebrafish DNA sequence from clone DKEY-178E17 in linkage group 8,
              complete sequence
          Length = 175313

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 117    ttattcaggagttgcccaat 136
              ||||||||||||||||||||
Sbjct: 125582 ttattcaggagttgcccaat 125563
to top
>gb|AY221110.1| Mus musculus collagen type XIV (Col14a1) mRNA, complete cds
          Length = 6456

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tgcatcggaactggaaggaa 56
            ||||||||||||||||||||
Sbjct: 6303 tgcatcggaactggaaggaa 6284
to top
>ref|XM_949347.1| Theileria annulata strain Ankara 26S proteasome regulatory particle
           (TA21405) partial mRNA
          Length = 1260

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 239 gatatggatgaggagtatga 258
           ||||||||||||||||||||
Sbjct: 232 gatatggatgaggagtatga 251
to top
>gb|AF039720.1| Caenorhabditis elegans cosmid F33D11, complete sequence
          Length = 37003

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   tttgaaatattttgaaaatg 167
             ||||||||||||||||||||
Sbjct: 26411 tttgaaatattttgaaaatg 26430
to top
>gb|AE014075.1| Escherichia coli CFT073, complete genome
          Length = 5231428

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 257     gaagacaatttgttcttgca 276
               ||||||||||||||||||||
Sbjct: 1487385 gaagacaatttgttcttgca 1487404
to top
>gb|AC144731.15| Medicago truncatula clone mth2-5g18, complete sequence
          Length = 115175

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 154   atattttgaaaatggtgggg 173
             ||||||||||||||||||||
Sbjct: 21932 atattttgaaaatggtgggg 21951
to top
>gb|CP000090.1| Ralstonia eutropha JMP134 chromosome 1, complete sequence
          Length = 3806533

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 359     ctgtgccgacctggggcacctcgc 382
               ||||||||||||||||||| ||||
Sbjct: 2365152 ctgtgccgacctggggcacatcgc 2365175
to top
>gb|AC158946.4| Mus musculus chromosome 1, clone RP24-267F8, complete sequence
          Length = 137800

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ctggaaggaaatgtttgtca 66
             ||||||||||||||||||||
Sbjct: 73319 ctggaaggaaatgtttgtca 73338
to top
>gb|AC015933.9| Homo sapiens chromosome 18, clone CTD-2023G8, complete sequence
          Length = 249021

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 84     tgtttggtttttcaaaccca 103
              ||||||||||||||||||||
Sbjct: 170088 tgtttggtttttcaaaccca 170107
to top
>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence
          Length = 204022

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 84    tgtttggtttttcaaaccca 103
             ||||||||||||||||||||
Sbjct: 96628 tgtttggtttttcaaaccca 96609
to top
>dbj|AK125777.1| Homo sapiens cDNA FLJ43789 fis, clone TESTI2053242
          Length = 2546

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 121 tcaggagttgcccaatgcaa 140
           ||||||||||||||||||||
Sbjct: 912 tcaggagttgcccaatgcaa 893
to top
>dbj|AK136987.1| Mus musculus 12 days embryo embryonic body between diaphragm region
            and neck cDNA, RIKEN full-length enriched library,
            clone:9430027G04 product:procollagen, type XIV, alpha 1,
            full insert sequence
          Length = 3048

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tgcatcggaactggaaggaa 56
            ||||||||||||||||||||
Sbjct: 2893 tgcatcggaactggaaggaa 2874
to top
>gb|AC156984.9| Mus musculus chromosome 5, clone RP23-418H8, complete sequence
          Length = 171080

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 459   tagcatgtgcaataatggattcct 482
             ||||| ||||||||||||||||||
Sbjct: 94073 tagcaggtgcaataatggattcct 94050
to top
>gb|AC024301.10| Homo sapiens, clone RP11-686O16, complete sequence
          Length = 195269

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    aaatattttgaaaatggtggggaa 175
              ||||||| ||||||||||||||||
Sbjct: 154669 aaatattatgaaaatggtggggaa 154692
to top
>dbj|AK009906.1| Mus musculus adult male tongue cDNA, RIKEN full-length enriched
            library, clone:2310050J15 product:procollagen, type XIV,
            alpha 1, full insert sequence
          Length = 1303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tgcatcggaactggaaggaa 56
            ||||||||||||||||||||
Sbjct: 1152 tgcatcggaactggaaggaa 1133
to top
>dbj|AK043358.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730088G13 product:weakly similar
            to HYPOTHETICAL 25.0 KDA PROTEIN (FRAGMENT) [Homo
            sapiens], full insert sequence
          Length = 4118

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 453  ctcatctagcatgtgcaata 472
            ||||||||||||||||||||
Sbjct: 1446 ctcatctagcatgtgcaata 1427
to top
>gb|AF266093.1|AF266093 Chalcolestes viridis large subunit ribosomal RNA gene, partial
            sequence; tRNA-Valine gene, complete sequence; and small
            subunit ribosomal RNA gene, partial sequence;
            mitochondrial genes for mitochondrial products
          Length = 1698

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 147  gtttgaaatattttgaaaat 166
            ||||||||||||||||||||
Sbjct: 1072 gtttgaaatattttgaaaat 1053
to top
>gb|AC067801.4|AC067801 Homo sapiens chromosome 18, clone RP11-583B12, complete sequence
          Length = 174938

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 152    aaatattttgaaaatggtggggaa 175
              ||||||| ||||||||||||||||
Sbjct: 138269 aaatattatgaaaatggtggggaa 138292
to top
>gb|AC151472.2| Mus musculus BAC clone RP23-407N2 from chromosome 7, complete sequence
          Length = 196583

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    gtttgaaatattttgaaaat 166
              ||||||||||||||||||||
Sbjct: 171550 gtttgaaatattttgaaaat 171531
to top
>gb|AC007880.2| Homo sapiens BAC clone RP11-323F11 from 2, complete sequence
          Length = 122223

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 121   tcaggagttgcccaatgcaa 140
             ||||||||||||||||||||
Sbjct: 12738 tcaggagttgcccaatgcaa 12719
to top
>gb|AC010729.8| Homo sapiens BAC clone RP11-350H23 from 2, complete sequence
          Length = 191934

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 105    aaattaggcagcttattcag 124
              ||||||||||||||||||||
Sbjct: 164361 aaattaggcagcttattcag 164342
to top
>gb|AC018366.39| Mus musculus strain 129/SvJ chromosome 5 clone mgs1-458e5, complete
             sequence
          Length = 126143

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 459   tagcatgtgcaataatggattcct 482
             ||||| ||||||||||||||||||
Sbjct: 67382 tagcaggtgcaataatggattcct 67405
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>emb|AL772341.12| Mouse DNA sequence from clone RP23-179N22 on chromosome 2, complete
              sequence
          Length = 219412

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 190    cagagctgttcatgttaatt 209
              ||||||||||||||||||||
Sbjct: 115163 cagagctgttcatgttaatt 115182
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>gb|AC018365.49| Mus musculus strain 129/SvJ clone mgs1-461b11 map 5, complete sequence
          Length = 117052

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 459   tagcatgtgcaataatggattcct 482
             ||||| ||||||||||||||||||
Sbjct: 14994 tagcaggtgcaataatggattcct 14971
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>emb|BX465210.7| Zebrafish DNA sequence from clone CH211-266A5 in linkage group 4,
             complete sequence
          Length = 171708

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   tcttgcaatgtgacaagtgc 289
             ||||||||||||||||||||
Sbjct: 63716 tcttgcaatgtgacaagtgc 63735
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>emb|AL772340.19| Zebrafish DNA sequence from clone CH211-150G2, complete sequence
          Length = 174176

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 157   ttttgaaaatggtggggaaa 176
             ||||||||||||||||||||
Sbjct: 22507 ttttgaaaatggtggggaaa 22488
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>gb|AC123682.13| Mus musculus chromosome 15, clone RP23-288J22, complete sequence
          Length = 170303

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 37     tgcatcggaactggaaggaa 56
              ||||||||||||||||||||
Sbjct: 158221 tgcatcggaactggaaggaa 158240
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>dbj|AP002455.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-93M11, complete
             sequence
          Length = 64000

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   gtgtttgaaatattttgaaa 164
             ||||||||||||||||||||
Sbjct: 63842 gtgtttgaaatattttgaaa 63823
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>gb|AC166329.3| Pan troglodytes BAC clone CH251-143I6 from chromosome unknown, complete
             sequence
          Length = 173896

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 84    tgtttggtttttcaaaccca 103
             ||||||||||||||||||||
Sbjct: 96119 tgtttggtttttcaaaccca 96138
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>gb|AC079445.28| Mus musculus strain C57BL/6J chromosome 5 clone rp23-403l21, complete
              sequence
          Length = 189517

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 459    tagcatgtgcaataatggattcct 482
              ||||| ||||||||||||||||||
Sbjct: 173813 tagcaggtgcaataatggattcct 173790
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>gb|AC119249.7| Mus musculus chromosome 7, clone RP24-274B19, complete sequence
          Length = 182985

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    gtttgaaatattttgaaaat 166
              ||||||||||||||||||||
Sbjct: 177229 gtttgaaatattttgaaaat 177248
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>emb|AL606536.13| Mouse DNA sequence from clone RP23-93C9 on chromosome 1, complete
             sequence
          Length = 180844

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 47    ctggaaggaaatgtttgtca 66
             ||||||||||||||||||||
Sbjct: 15791 ctggaaggaaatgtttgtca 15772
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>emb|AJ131395.1|MMU131395 Mus musculus mRNA for collagen type XIV, partial
          Length = 1171

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 37   tgcatcggaactggaaggaa 56
            ||||||||||||||||||||
Sbjct: 1018 tgcatcggaactggaaggaa 999
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>dbj|AP002761.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-800A3, complete
             sequence
          Length = 196988

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 145   gtgtttgaaatattttgaaa 164
             ||||||||||||||||||||
Sbjct: 20657 gtgtttgaaatattttgaaa 20638


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,743,791
Number of Sequences: 3902068
Number of extensions: 4743791
Number of successful extensions: 95994
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95826
Number of HSP's gapped (non-prelim): 164
length of query: 487
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 465
effective length of database: 17,147,199,772
effective search space: 7973447893980
effective search space used: 7973447893980
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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