ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd20f23 |
|---|---|
| Clone Library Name | barley_pub |
>ref|NM_183432.2| Oryza sativa (japonica cultivar-group), mRNA Length = 2223 Score = 258 bits (130), Expect = 1e-65 Identities = 370/450 (82%) Strand = Plus / Plus Query: 11 cttccttggattggtcactgtgctgctgtaccaagctatcaagaggcgcaacatcgaggt 70 |||| ||||||| ||||||||||||||||||||||| ||| | || |||||||| || || Sbjct: 651 cttcgttggattagtcactgtgctgctgtaccaagccatccaaagacgcaacattgaagt 710 Query: 71 gcaccgagtcaagccggccaatgctcctgatctcttggctttcgtcaacgacatcgagtt 130 ||| || ||||| || ||||||||||||||| | ||| |||| ||||| || |||||||| Sbjct: 711 gcatcgggtcaaaccagccaatgctcctgatttgttgtcttttgtcaatgatatcgagtt 770 Query: 131 ccacatcaccaccatctcgagcatgtcctgctctcaggtggtcaagccttcgacgatcgc 190 |||||| ||||||||||| |||||||| ||||||||| |||| ||||| || || || Sbjct: 771 ccacataaccaccatctctagcatgtcttgctctcagttggttgccccttctacaattgc 830 Query: 191 gatggggacgcccgggttcatggacttcagggtgctgcctctctcgacgctcttgaccta 250 ||||| || || || | |||||||||||| |||||||| | || || | ||||| || Sbjct: 831 aatgggaacacctggatctatggacttcaggctgctgcctttgtcaacattgttgacata 890 Query: 251 cagttgccagaacacgagccaggggccgtctatcacgctcaagtgcagcggctgcagaat 310 || |||||||||||||||||||||||| ||| | | |||||||||| ||||||||||| Sbjct: 891 caattgccagaacacgagccaggggccatctgtttcactcaagtgcaatggctgcagaat 950 Query: 311 gcctccaagagaccactacgtgtcctggcagtttgttgacctgccgaggcaaccggcact 370 || ||||||||||||||||| |||||||| ||| |||||||||| |||||||| || Sbjct: 951 cccgccaagagaccactacgtatcctggcaatttattgacctgccaaggcaaccagctgc 1010 Query: 371 agctgttggcttccagttcaacctgactaccaagcaaaccggagacgatgagcacgtgag 430 ||||||||||||||||| || || ||| | |||||| ||||| || | || ||||| Sbjct: 1011 cgctgttggcttccagtttaatctcactgcgaagcaacatggagatgacaaacatgtgag 1070 Query: 431 ctttgtcagtgggaccataaactctgacaa 460 || ||||||||| || |||||||| ||||| Sbjct: 1071 ctctgtcagtggaactataaactccgacaa 1100
>dbj|AK067316.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013104J17, full insert sequence Length = 2223 Score = 250 bits (126), Expect = 4e-63 Identities = 369/450 (82%) Strand = Plus / Plus Query: 11 cttccttggattggtcactgtgctgctgtaccaagctatcaagaggcgcaacatcgaggt 70 |||| ||||||| ||||||||||||||||||||||| ||| | || |||||||| || || Sbjct: 651 cttcgttggattagtcactgtgctgctgtaccaagccatccaaagacgcaacattgaagt 710 Query: 71 gcaccgagtcaagccggccaatgctcctgatctcttggctttcgtcaacgacatcgagtt 130 ||| || ||||| || ||||||||||||||| | ||| |||| ||||| || ||||| || Sbjct: 711 gcatcgggtcaaaccagccaatgctcctgatttgttgtcttttgtcaatgatatcgaatt 770 Query: 131 ccacatcaccaccatctcgagcatgtcctgctctcaggtggtcaagccttcgacgatcgc 190 |||||| ||||||||||| |||||||| ||||||||| |||| ||||| || || || Sbjct: 771 ccacataaccaccatctctagcatgtcttgctctcagttggttgccccttctacaattgc 830 Query: 191 gatggggacgcccgggttcatggacttcagggtgctgcctctctcgacgctcttgaccta 250 ||||| || || || | |||||||||||| |||||||| | || || | ||||| || Sbjct: 831 aatgggaacacctggatctatggacttcaggctgctgcctttgtcaacattgttgacata 890 Query: 251 cagttgccagaacacgagccaggggccgtctatcacgctcaagtgcagcggctgcagaat 310 || |||||||||||||||||||||||| ||| | | |||||||||| ||||||||||| Sbjct: 891 caattgccagaacacgagccaggggccatctgtttcactcaagtgcaatggctgcagaat 950 Query: 311 gcctccaagagaccactacgtgtcctggcagtttgttgacctgccgaggcaaccggcact 370 || ||||||||||||||||| |||||||| ||| |||||||||| |||||||| || Sbjct: 951 cccgccaagagaccactacgtatcctggcaatttattgacctgccaaggcaaccagctgc 1010 Query: 371 agctgttggcttccagttcaacctgactaccaagcaaaccggagacgatgagcacgtgag 430 ||||||||||||||||| || || ||| | |||||| ||||| || | || ||||| Sbjct: 1011 cgctgttggcttccagtttaatctcactgcgaagcaacatggagatgacaaacatgtgag 1070 Query: 431 ctttgtcagtgggaccataaactctgacaa 460 || ||||||||| || |||||||| ||||| Sbjct: 1071 ctctgtcagtggaactataaactccgacaa 1100
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 232 bits (117), Expect = 8e-58 Identities = 351/429 (81%) Strand = Plus / Plus Query: 32 gctgctgtaccaagctatcaagaggcgcaacatcgaggtgcaccgagtcaagccggccaa 91 ||||||||||||||| ||| | || |||||||| || ||||| || ||||| || ||||| Sbjct: 16558 gctgctgtaccaagccatccaaagacgcaacattgaagtgcatcgggtcaaaccagccaa 16617 Query: 92 tgctcctgatctcttggctttcgtcaacgacatcgagttccacatcaccaccatctcgag 151 |||||||||| | ||| |||| ||||| || |||||||||||||| ||||||||||| || Sbjct: 16618 tgctcctgatttgttgtcttttgtcaatgatatcgagttccacataaccaccatctctag 16677 Query: 152 catgtcctgctctcaggtggtcaagccttcgacgatcgcgatggggacgcccgggttcat 211 |||||| ||||||||| |||| ||||| || || || ||||| || || || | || Sbjct: 16678 catgtcttgctctcagttggttgccccttctacaattgcaatgggaacacctggatctat 16737 Query: 212 ggacttcagggtgctgcctctctcgacgctcttgacctacagttgccagaacacgagcca 271 |||||||||| |||||||| | || || | ||||| |||| |||||||||||||||||| Sbjct: 16738 ggacttcaggctgctgcctttgtcaacattgttgacatacaattgccagaacacgagcca 16797 Query: 272 ggggccgtctatcacgctcaagtgcagcggctgcagaatgcctccaagagaccactacgt 331 |||||| ||| | | |||||||||| ||||||||||| || ||||||||||||||||| Sbjct: 16798 ggggccatctgtttcactcaagtgcaatggctgcagaatcccgccaagagaccactacgt 16857 Query: 332 gtcctggcagtttgttgacctgccgaggcaaccggcactagctgttggcttccagttcaa 391 |||||||| ||| |||||||||| |||||||| || ||||||||||||||||| || Sbjct: 16858 atcctggcaatttattgacctgccaaggcaaccagctgccgctgttggcttccagtttaa 16917 Query: 392 cctgactaccaagcaaaccggagacgatgagcacgtgagctttgtcagtgggaccataaa 451 || ||| | |||||| ||||| || | || ||||||| ||||||||| || ||||| Sbjct: 16918 tctcactgcgaagcaacatggagatgacaaacatgtgagctctgtcagtggaactataaa 16977 Query: 452 ctctgacaa 460 ||| ||||| Sbjct: 16978 ctccgacaa 16986
>dbj|AP003727.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0672D08 Length = 173729 Score = 232 bits (117), Expect = 8e-58 Identities = 351/429 (81%) Strand = Plus / Plus Query: 32 gctgctgtaccaagctatcaagaggcgcaacatcgaggtgcaccgagtcaagccggccaa 91 ||||||||||||||| ||| | || |||||||| || ||||| || ||||| || ||||| Sbjct: 14360 gctgctgtaccaagccatccaaagacgcaacattgaagtgcatcgggtcaaaccagccaa 14419 Query: 92 tgctcctgatctcttggctttcgtcaacgacatcgagttccacatcaccaccatctcgag 151 |||||||||| | ||| |||| ||||| || |||||||||||||| ||||||||||| || Sbjct: 14420 tgctcctgatttgttgtcttttgtcaatgatatcgagttccacataaccaccatctctag 14479 Query: 152 catgtcctgctctcaggtggtcaagccttcgacgatcgcgatggggacgcccgggttcat 211 |||||| ||||||||| |||| ||||| || || || ||||| || || || | || Sbjct: 14480 catgtcttgctctcagttggttgccccttctacaattgcaatgggaacacctggatctat 14539 Query: 212 ggacttcagggtgctgcctctctcgacgctcttgacctacagttgccagaacacgagcca 271 |||||||||| |||||||| | || || | ||||| |||| |||||||||||||||||| Sbjct: 14540 ggacttcaggctgctgcctttgtcaacattgttgacatacaattgccagaacacgagcca 14599 Query: 272 ggggccgtctatcacgctcaagtgcagcggctgcagaatgcctccaagagaccactacgt 331 |||||| ||| | | |||||||||| ||||||||||| || ||||||||||||||||| Sbjct: 14600 ggggccatctgtttcactcaagtgcaatggctgcagaatcccgccaagagaccactacgt 14659 Query: 332 gtcctggcagtttgttgacctgccgaggcaaccggcactagctgttggcttccagttcaa 391 |||||||| ||| |||||||||| |||||||| || ||||||||||||||||| || Sbjct: 14660 atcctggcaatttattgacctgccaaggcaaccagctgccgctgttggcttccagtttaa 14719 Query: 392 cctgactaccaagcaaaccggagacgatgagcacgtgagctttgtcagtgggaccataaa 451 || ||| | |||||| ||||| || | || ||||||| ||||||||| || ||||| Sbjct: 14720 tctcactgcgaagcaacatggagatgacaaacatgtgagctctgtcagtggaactataaa 14779 Query: 452 ctctgacaa 460 ||| ||||| Sbjct: 14780 ctccgacaa 14788
>dbj|AP008219.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, fosmid clone:OSJNOa264G09 Length = 31687 Score = 232 bits (117), Expect = 8e-58 Identities = 351/429 (81%) Strand = Plus / Plus Query: 32 gctgctgtaccaagctatcaagaggcgcaacatcgaggtgcaccgagtcaagccggccaa 91 ||||||||||||||| ||| | || |||||||| || ||||| || ||||| || ||||| Sbjct: 16558 gctgctgtaccaagccatccaaagacgcaacattgaagtgcatcgggtcaaaccagccaa 16617 Query: 92 tgctcctgatctcttggctttcgtcaacgacatcgagttccacatcaccaccatctcgag 151 |||||||||| | ||| |||| ||||| || |||||||||||||| ||||||||||| || Sbjct: 16618 tgctcctgatttgttgtcttttgtcaatgatatcgagttccacataaccaccatctctag 16677 Query: 152 catgtcctgctctcaggtggtcaagccttcgacgatcgcgatggggacgcccgggttcat 211 |||||| ||||||||| |||| ||||| || || || ||||| || || || | || Sbjct: 16678 catgtcttgctctcagttggttgccccttctacaattgcaatgggaacacctggatctat 16737 Query: 212 ggacttcagggtgctgcctctctcgacgctcttgacctacagttgccagaacacgagcca 271 |||||||||| |||||||| | || || | ||||| |||| |||||||||||||||||| Sbjct: 16738 ggacttcaggctgctgcctttgtcaacattgttgacatacaattgccagaacacgagcca 16797 Query: 272 ggggccgtctatcacgctcaagtgcagcggctgcagaatgcctccaagagaccactacgt 331 |||||| ||| | | |||||||||| ||||||||||| || ||||||||||||||||| Sbjct: 16798 ggggccatctgtttcactcaagtgcaatggctgcagaatcccgccaagagaccactacgt 16857 Query: 332 gtcctggcagtttgttgacctgccgaggcaaccggcactagctgttggcttccagttcaa 391 |||||||| ||| |||||||||| |||||||| || ||||||||||||||||| || Sbjct: 16858 atcctggcaatttattgacctgccaaggcaaccagctgccgctgttggcttccagtttaa 16917 Query: 392 cctgactaccaagcaaaccggagacgatgagcacgtgagctttgtcagtgggaccataaa 451 || ||| | |||||| ||||| || | || ||||||| ||||||||| || ||||| Sbjct: 16918 tctcactgcgaagcaacatggagatgacaaacatgtgagctctgtcagtggaactataaa 16977 Query: 452 ctctgacaa 460 ||| ||||| Sbjct: 16978 ctccgacaa 16986
>dbj|AP003610.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0402A09 Length = 141966 Score = 232 bits (117), Expect = 8e-58 Identities = 351/429 (81%) Strand = Plus / Plus Query: 32 gctgctgtaccaagctatcaagaggcgcaacatcgaggtgcaccgagtcaagccggccaa 91 ||||||||||||||| ||| | || |||||||| || ||||| || ||||| || ||||| Sbjct: 1488 gctgctgtaccaagccatccaaagacgcaacattgaagtgcatcgggtcaaaccagccaa 1547 Query: 92 tgctcctgatctcttggctttcgtcaacgacatcgagttccacatcaccaccatctcgag 151 |||||||||| | ||| |||| ||||| || |||||||||||||| ||||||||||| || Sbjct: 1548 tgctcctgatttgttgtcttttgtcaatgatatcgagttccacataaccaccatctctag 1607 Query: 152 catgtcctgctctcaggtggtcaagccttcgacgatcgcgatggggacgcccgggttcat 211 |||||| ||||||||| |||| ||||| || || || ||||| || || || | || Sbjct: 1608 catgtcttgctctcagttggttgccccttctacaattgcaatgggaacacctggatctat 1667 Query: 212 ggacttcagggtgctgcctctctcgacgctcttgacctacagttgccagaacacgagcca 271 |||||||||| |||||||| | || || | ||||| |||| |||||||||||||||||| Sbjct: 1668 ggacttcaggctgctgcctttgtcaacattgttgacatacaattgccagaacacgagcca 1727 Query: 272 ggggccgtctatcacgctcaagtgcagcggctgcagaatgcctccaagagaccactacgt 331 |||||| ||| | | |||||||||| ||||||||||| || ||||||||||||||||| Sbjct: 1728 ggggccatctgtttcactcaagtgcaatggctgcagaatcccgccaagagaccactacgt 1787 Query: 332 gtcctggcagtttgttgacctgccgaggcaaccggcactagctgttggcttccagttcaa 391 |||||||| ||| |||||||||| |||||||| || ||||||||||||||||| || Sbjct: 1788 atcctggcaatttattgacctgccaaggcaaccagctgccgctgttggcttccagtttaa 1847 Query: 392 cctgactaccaagcaaaccggagacgatgagcacgtgagctttgtcagtgggaccataaa 451 || ||| | |||||| ||||| || | || ||||||| ||||||||| || ||||| Sbjct: 1848 tctcactgcgaagcaacatggagatgacaaacatgtgagctctgtcagtggaactataaa 1907 Query: 452 ctctgacaa 460 ||| ||||| Sbjct: 1908 ctccgacaa 1916
>gb|AC147025.2| Pan troglodytes BAC clone RP43-92C7 from 7, complete sequence Length = 142948 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 agctgttggcttccagttcaac 392 |||||||||||||||||||||| Sbjct: 133183 agctgttggcttccagttcaac 133162
>gb|AC004885.2| Homo sapiens PAC clone RP4-781A18 from 7, complete sequence Length = 190842 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 371 agctgttggcttccagttcaac 392 |||||||||||||||||||||| Sbjct: 149059 agctgttggcttccagttcaac 149038
>ref|XM_952077.1| Neurospora crassa OR74A related to multifunctional cyclin-dependent kinase PHO85 [MIPS] (NCU01747.1) partial mRNA Length = 3738 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 ggccgtctatcacgctcaagtgcagcggc 302 ||||| |||| |||||||||||||||||| Sbjct: 1297 ggccgcctataacgctcaagtgcagcggc 1269
>ref|XM_328185.1| Neurospora crassa OR74A related to multifunctional cyclin-dependent kinase PHO85 [MIPS] (NCU01747.1) partial mRNA Length = 3738 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 274 ggccgtctatcacgctcaagtgcagcggc 302 ||||| |||| |||||||||||||||||| Sbjct: 1297 ggccgcctataacgctcaagtgcagcggc 1269
>emb|AL590611.7| Human DNA sequence from clone RP11-138K10 on chromosome 6 Contains part of a novel gene, complete sequence Length = 77888 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 214 acttcagggtgctgcctctct 234 ||||||||||||||||||||| Sbjct: 5781 acttcagggtgctgcctctct 5761
>emb|AL356815.1|NCB24H17 Neurospora crassa DNA linkage group II BAC clone B24H17 Length = 82972 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Plus Query: 274 ggccgtctatcacgctcaagtgcagcggc 302 ||||| |||| |||||||||||||||||| Sbjct: 5524 ggccgcctataacgctcaagtgcagcggc 5552
>emb|BX119918.18| Zebrafish DNA sequence from clone CH211-202H22 in linkage group 1, complete sequence Length = 141342 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 22 tggtcactgtgctgctgtacc 42 ||||||||||||||||||||| Sbjct: 76439 tggtcactgtgctgctgtacc 76459
>gb|AF367366.1|AF367366 Mesembryanthemum crystallinum putative potassium-sodium transporter mRNA, complete cds Length = 1904 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 caccaccatctcgagcatgtc 157 ||||||||||||||||||||| Sbjct: 415 caccaccatctcgagcatgtc 435
>gb|AY489610.1| Balansia henningsiana strain AEG96-27a translation elongation factor 1 alpha gene, partial cds Length = 999 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 217 tcagggtgctgcctctctcgacgc 240 |||||||||||||||| ||||||| Sbjct: 702 tcagggtgctgcctctttcgacgc 725
>gb|AC012323.7|AC012323 Homo sapiens chromosome 16 clone RP11-89O14, complete sequence Length = 176512 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 tgtcctgctctcaggtggtc 173 |||||||||||||||||||| Sbjct: 43342 tgtcctgctctcaggtggtc 43361
>gb|AC092378.4| Homo sapiens chromosome 16 clone RP11-700H13, complete sequence Length = 199868 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 tgtcctgctctcaggtggtc 173 |||||||||||||||||||| Sbjct: 44115 tgtcctgctctcaggtggtc 44096
>emb|AL591411.14| Mouse DNA sequence from clone RP23-428M13 on chromosome 2, complete sequence Length = 155889 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 162 tctcaggtggtcaagccttc 181 |||||||||||||||||||| Sbjct: 37332 tctcaggtggtcaagccttc 37313 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,040,321 Number of Sequences: 3902068 Number of extensions: 3040321 Number of successful extensions: 58566 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58514 Number of HSP's gapped (non-prelim): 40 length of query: 476 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 454 effective length of database: 17,147,199,772 effective search space: 7784828696488 effective search space used: 7784828696488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
