>RPOC_THEMA (P36252) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1690

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +3

Query: 24   VTVLLYQAIKRRNIEVHRVKPANAPDLLAFVNDIEFHITTISSMSCS 164
            +  L+Y+  KR  I+        A DLL  + DI FH  T+S ++ S
Sbjct: 888  INALVYETFKRHGID-------RAADLLDDIKDIGFHYATVSGLTLS 927

>KPRS_COREF (Q8FQV2) Ribose-phosphate pyrophosphokinase (EC 2.7.6.1) (RPPK)|
           (Phosphoribosyl pyrophosphate synthetase) (P-Rib-PP
           synthetase) (PRPP synthetase)
          Length = 325

 Score = 29.6 bits (65), Expect = 4.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 144 ISSMSCSQVVKPSTIAMGTPGFMDFRVLPLSTLLTYSCQNTSQGPSITLKCSG 302
           +SS    +V+   T+   T G+ +  VLP++ LL  +     +  S+T    G
Sbjct: 271 LSSCGAEEVITTDTLPQSTEGWSNLTVLPIAPLLARTISEIFENGSVTTLFEG 323

>THRB_RAT (P18292) Prothrombin precursor (EC 3.4.21.5) (Coagulation factor|
           II) [Contains: Activation peptide fragment 1; Activation
           peptide fragment 2; Thrombin light chain; Thrombin heavy
           chain]
          Length = 617

 Score = 28.9 bits (63), Expect = 7.2
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = +3

Query: 225 LPLSTLLTYSCQNTSQGPSITLKCSGCRMPPRDHYVSWQFVDLPRQPALAVGFQF---NL 395
           LP  TL  Y  QN    P + L  + CR P RD   +W FV   +QP    GF++   N 
Sbjct: 242 LPTKTLSKY--QNFD--PEVKLVQNFCRNPDRDEEGAWCFV--AQQP----GFEYCSLNY 291

Query: 396 TTKQTGDDEH 425
             +  G++ H
Sbjct: 292 CDEAVGEENH 301

>Y4168_BRUSU (Q8FUQ2) UPF0261 protein BRA1168|
          Length = 418

 Score = 28.5 bits (62), Expect = 9.4
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -1

Query: 302 AAALERDRRPLARVLATVGQERRERQHPEVHE 207
           AA LER   P+A +L T G + R+R    +HE
Sbjct: 331 AAKLERAAAPVAFILPTGGVQERDRNGEPLHE 362


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,865,115
Number of Sequences: 219361
Number of extensions: 1164934
Number of successful extensions: 3603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3603
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3188886965
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)